JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IDI2_chr10_1013910_1030859	0/0	t0010	673	1	0	1	0	0	0	copy fasta	IDI2	chr10	1013910	1030859
IDI2_chr10_1013910_1030859	1/0	t0011	673	1	0	0	0	0	0	copy fasta	IDI2	chr10	1013910	1030859
IDI2_chr10_1013910_1030859	0/0	t0012	673	1	1	0	0	0	0	copy fasta	IDI2	chr10	1013910	1030859
IDI2_chr10_1013910_1030859	0/0	t0013	674	1	1	0	0	0	0	copy fasta	IDI2	chr10	1013910	1030859
IDNK_chr9_83618143_83649123	0/1	t0001	373	274	74	46	99	15	39	copy fasta	IDNK	chr9	83618143	83649123
IDNK_chr9_83618143_83649123	1/0	t0002	373	48	12	11	21	0	3	copy fasta	IDNK	chr9	83618143	83649123
IDNK_chr9_83618143_83649123	0/0	t0003	373	6	6	0	0	0	0	copy fasta	IDNK	chr9	83618143	83649123
IDNK_chr9_83618143_83649123	0/0	t0004	373	2	1	1	0	0	0	copy fasta	IDNK	chr9	83618143	83649123
IDNK_chr9_83618143_83649123	0/0	t0005	373	1	0	0	0	1	0	copy fasta	IDNK	chr9	83618143	83649123
IDNK_chr9_83618143_83649123	0/0	t0006	373	1	1	0	0	0	0	copy fasta	IDNK	chr9	83618143	83649123
IDO1_chr8_39908891_39933790	1/0	t0001	638	364	70	66	177	14	36	copy fasta	IDO1	chr8	39908891	39933790
IDO1_chr8_39908891_39933790	0/1	t0002	639	20	6	8	2	0	3	copy fasta	IDO1	chr8	39908891	39933790
IDO1_chr8_39908891_39933790	0/0	t0003	638	13	11	0	0	0	2	copy fasta	IDO1	chr8	39908891	39933790
IDO1_chr8_39908891_39933790	0/0	t0004	638	8	4	2	2	0	0	copy fasta	IDO1	chr8	39908891	39933790
IDO1_chr8_39908891_39933790	0/0	t0005	638	4	4	0	0	0	0	copy fasta	IDO1	chr8	39908891	39933790
IDO1_chr8_39908891_39933790	0/0	t0006	638	3	3	0	0	0	0	copy fasta	IDO1	chr8	39908891	39933790
IDO1_chr8_39908891_39933790	0/0	t0007	638	3	0	0	3	0	0	copy fasta	IDO1	chr8	39908891	39933790
IDO1_chr8_39908891_39933790	0/0	t0008	638	2	2	0	0	0	0	copy fasta	IDO1	chr8	39908891	39933790
IDO1_chr8_39908891_39933790	0/0	t0009	638	1	0	0	1	0	0	copy fasta	IDO1	chr8	39908891	39933790
IDO1_chr8_39908891_39933790	0/0	t0010	638	1	0	0	1	0	0	copy fasta	IDO1	chr8	39908891	39933790
IDO1_chr8_39908891_39933790	0/0	t0011	638	1	0	0	0	0	1	copy fasta	IDO1	chr8	39908891	39933790
IDO1_chr8_39908891_39933790	0/0	t0012	639	1	0	0	1	0	0	copy fasta	IDO1	chr8	39908891	39933790
IDO1_chr8_39908891_39933790	0/0	t0013	638	1	0	0	1	0	0	copy fasta	IDO1	chr8	39908891	39933790
IDO2_chr8_39929651_40021392	0/1	t0001	1377	70	9	19	30	1	10	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	t0002	1375	44	0	7	32	2	3	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	t0003	1376	36	3	16	13	2	2	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	t0004	1376	30	9	1	20	0	0	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	t0005	1376	29	14	11	2	0	2	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	t0006	1375	23	5	1	13	0	4	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	t0007	1376	21	3	1	14	0	3	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	t0008	1376	17	2	1	3	2	9	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	t0009	1375	16	12	0	2	1	1	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	t0010	1375	15	0	4	8	1	2	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	t0011	1375	13	1	2	8	0	2	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	t0012	1377	10	10	0	0	0	0	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	t0013	1375	9	3	5	1	0	0	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	t0014	1375	8	8	0	0	0	0	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	1/0	t0015	1376	5	4	0	0	0	0	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	t0016	1376	3	3	0	0	0	0	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	t0017	1375	2	2	0	0	0	0	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	t0018	1377	1	1	0	0	0	0	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	t0019	1375	1	0	1	0	0	0	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	t0020	1375	1	0	1	0	0	0	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	t0021	1375	1	1	0	0	0	0	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	t0022	1375	1	0	0	0	1	0	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	t0023	1399	1	1	0	0	0	0	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	t0024	1377	1	1	0	0	0	0	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	t0025	1377	1	0	0	1	0	0	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	t0026	1376	1	0	0	1	0	0	copy fasta	IDO2	chr8	39929651	40021392
IDS_chrX_149471988_149510306	0/0	t0001	5928	163	8	33	98	4	20	copy fasta	IDS	chrX	149471988	149510306