Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANKRD16_chr10_5856616_5894893	0/0	t0028	1649	1	0	1	0	0	0	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	t0029	1648	1	0	0	1	0	0	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	t0030	1638	1	0	0	1	0	0	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	t0031	1649	1	0	0	1	0	0	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD17_chr4_73068376_73263798	1/0	t0001	2986	136	47	31	44	7	6	copy fasta	ANKRD17	chr4	73068376	73263798
ANKRD17_chr4_73068376_73263798	0/0	t0002	2986	81	13	16	38	3	11	copy fasta	ANKRD17	chr4	73068376	73263798
ANKRD17_chr4_73068376_73263798	0/1	t0003	2986	52	2	9	28	2	10	copy fasta	ANKRD17	chr4	73068376	73263798
ANKRD17_chr4_73068376_73263798	0/0	t0004	2986	4	0	0	4	0	0	copy fasta	ANKRD17	chr4	73068376	73263798
ANKRD17_chr4_73068376_73263798	0/0	t0005	2986	4	0	0	4	0	0	copy fasta	ANKRD17	chr4	73068376	73263798
ANKRD17_chr4_73068376_73263798	0/0	t0006	2986	3	0	0	3	0	0	copy fasta	ANKRD17	chr4	73068376	73263798
ANKRD17_chr4_73068376_73263798	0/0	t0007	2986	3	0	0	0	0	3	copy fasta	ANKRD17	chr4	73068376	73263798
ANKRD17_chr4_73068376_73263798	0/0	t0008	2986	2	0	2	0	0	0	copy fasta	ANKRD17	chr4	73068376	73263798
ANKRD17_chr4_73068376_73263798	0/0	t0009	2986	1	0	0	1	0	0	copy fasta	ANKRD17	chr4	73068376	73263798
ANKRD17_chr4_73068376_73263798	0/0	t0010	2986	1	1	0	0	0	0	copy fasta	ANKRD17	chr4	73068376	73263798
ANKRD17_chr4_73068376_73263798	0/0	t0011	2986	1	1	0	0	0	0	copy fasta	ANKRD17	chr4	73068376	73263798
ANKRD17_chr4_73068376_73263798	0/0	t0012	2986	1	1	0	0	0	0	copy fasta	ANKRD17	chr4	73068376	73263798
ANKRD17_chr4_73068376_73263798	0/0	t0013	2986	1	1	0	0	0	0	copy fasta	ANKRD17	chr4	73068376	73263798
ANKRD17_chr4_73068376_73263798	0/0	t0014	2986	1	0	0	1	0	0	copy fasta	ANKRD17	chr4	73068376	73263798
ANKRD17_chr4_73068376_73263798	0/0	t0015	2986	1	0	0	1	0	0	copy fasta	ANKRD17	chr4	73068376	73263798
ANKRD18A_chr9_38566364_38625596	0/1	t0001	997	64	0	10	48	2	3	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	1/0	t0002	993	58	8	10	18	3	18	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	t0003	993	57	31	6	13	1	6	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	t0004	974	47	2	10	25	4	6	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	t0005	978	40	1	1	32	3	3	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	t0006	997	39	26	8	4	0	1	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	t0007	978	33	2	9	21	0	1	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	t0008	997	24	5	4	15	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	t0009	997	16	1	5	8	1	1	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	t0010	993	4	4	0	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	t0011	997	4	3	1	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	t0012	997	2	2	0	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	t0013	997	2	2	0	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	t0014	993	2	2	0	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	t0015	997	1	1	0	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	t0016	978	1	0	0	1	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	t0017	978	1	1	0	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	t0018	974	1	1	0	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	t0019	978	1	0	0	1	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	t0020	997	1	0	0	0	0	1	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	t0021	997	1	1	0	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	t0022	997	1	1	0	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	t0023	993	1	1	0	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	t0024	997	1	1	0	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18B_chr9_33519251_33578013	0/1	t0001	838	166	26	32	80	8	19	copy fasta	ANKRD18B	chr9	33519251	33578013
ANKRD18B_chr9_33519251_33578013	1/0	t0002	819	69	29	16	20	0	3	copy fasta	ANKRD18B	chr9	33519251	33578013
ANKRD18B_chr9_33519251_33578013	0/0	t0003	848	38	7	10	14	1	6	copy fasta	ANKRD18B	chr9	33519251	33578013
ANKRD18B_chr9_33519251_33578013	0/0	t0004	838	32	2	6	17	1	6	copy fasta	ANKRD18B	chr9	33519251	33578013
ANKRD18B_chr9_33519251_33578013	0/0	t0005	848	25	1	4	17	2	1	copy fasta	ANKRD18B	chr9	33519251	33578013
ANKRD18B_chr9_33519251_33578013	0/0	t0006	838	12	3	2	5	0	2	copy fasta	ANKRD18B	chr9	33519251	33578013
ANKRD18B_chr9_33519251_33578013	0/0	t0007	829	10	9	1	0	0	0	copy fasta	ANKRD18B	chr9	33519251	33578013