JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IDS_chrX_149471988_149510306	0/0	t0002	5927	31	8	9	9	2	3	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	t0003	5928	15	13	2	0	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	t0004	5927	13	0	2	9	1	1	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	t0005	5927	9	9	0	0	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/1	t0006	5928	8	0	3	0	2	2	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	t0007	5928	6	6	0	0	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	t0008	5928	5	4	0	1	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	t0009	5928	4	4	0	0	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	t0010	5928	4	4	0	0	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	t0011	5928	4	4	0	0	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	t0012	5927	3	0	0	3	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	t0013	5928	3	0	0	0	0	3	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	t0014	5928	2	2	0	0	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	t0015	5927	2	2	0	0	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	t0016	5927	2	0	1	0	1	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	t0017	5928	2	2	0	0	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	t0018	5928	2	0	0	0	0	2	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	t0019	5929	2	2	0	0	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	t0020	5918	1	1	0	0	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	t0021	5928	1	1	0	0	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	t0022	5927	1	1	0	0	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	t0023	5927	1	1	0	0	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	t0024	5928	1	0	1	0	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	t0025	5928	1	1	0	0	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	t0026	5928	1	0	0	1	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	t0027	5928	1	1	0	0	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	1/0	t0028	5928	1	0	0	0	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	t0029	5928	1	0	1	0	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	t0030	5928	1	0	0	1	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	t0031	5928	1	0	0	0	0	1	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	t0032	5928	1	0	0	1	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	t0033	5928	1	0	0	1	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	t0034	5928	1	0	0	1	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	t0035	5928	1	1	0	0	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	t0036	5928	1	1	0	0	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	t0037	5928	1	0	0	1	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	t0038	5928	1	1	0	0	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	t0039	5928	1	1	0	0	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	t0040	5928	1	0	0	1	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	t0041	5928	1	0	0	0	1	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	t0042	5930	1	0	0	1	0	0	copy fasta	IDS	chrX	149471988	149510306
IDUA_chr4_982044_1009564	0/0	t0001	213	426	100	80	182	18	46	copy fasta	IDUA	chr4	982044	1009564
IER2_chr19_13145411_13159911	1/1	t0001	1439	270	79	52	97	6	34	copy fasta	IER2	chr19	13145411	13159911
IER2_chr19_13145411_13159911	0/0	t0002	1439	18	16	2	0	0	0	copy fasta	IER2	chr19	13145411	13159911
IER2_chr19_13145411_13159911	0/0	t0003	1439	17	0	5	4	4	4	copy fasta	IER2	chr19	13145411	13159911
IER2_chr19_13145411_13159911	0/0	t0004	1438	8	0	3	0	1	4	copy fasta	IER2	chr19	13145411	13159911
IER2_chr19_13145411_13159911	0/0	t0005	1439	8	0	5	0	1	2	copy fasta	IER2	chr19	13145411	13159911
IER2_chr19_13145411_13159911	0/0	t0006	1439	1	0	0	1	0	0	copy fasta	IER2	chr19	13145411	13159911
IER2_chr19_13145411_13159911	0/0	t0007	1439	1	0	0	1	0	0	copy fasta	IER2	chr19	13145411	13159911
IER2_chr19_13145411_13159911	0/0	t0008	1439	1	0	0	0	0	1	copy fasta	IER2	chr19	13145411	13159911