JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IER2_chr19_13145411_13159911	0/0	t0009	1439	1	0	1	0	0	0	copy fasta	IER2	chr19	13145411	13159911
IER2_chr19_13145411_13159911	0/0	t0010	1439	1	0	1	0	0	0	copy fasta	IER2	chr19	13145411	13159911
IER2_chr19_13145411_13159911	0/0	t0011	1439	1	1	0	0	0	0	copy fasta	IER2	chr19	13145411	13159911
IER2_chr19_13145411_13159911	0/0	t0012	1439	1	0	0	0	0	1	copy fasta	IER2	chr19	13145411	13159911
IER2_chr19_13145411_13159911	0/0	t0013	1439	1	0	0	1	0	0	copy fasta	IER2	chr19	13145411	13159911
IER2_chr19_13145411_13159911	0/0	t0014	1439	1	0	1	0	0	0	copy fasta	IER2	chr19	13145411	13159911
IER3IP1_chr18_47147834_47181364	1/0	t0001	3431	130	25	24	58	4	18	copy fasta	IER3IP1	chr18	47147834	47181364
IER3IP1_chr18_47147834_47181364	0/1	t0002	3429	60	22	20	0	7	10	copy fasta	IER3IP1	chr18	47147834	47181364
IER3IP1_chr18_47147834_47181364	0/0	t0003	3431	53	0	3	47	1	2	copy fasta	IER3IP1	chr18	47147834	47181364
IER3IP1_chr18_47147834_47181364	0/0	t0004	3429	39	1	15	17	1	5	copy fasta	IER3IP1	chr18	47147834	47181364
IER3IP1_chr18_47147834_47181364	0/0	t0005	3431	36	3	4	28	1	0	copy fasta	IER3IP1	chr18	47147834	47181364
IER3IP1_chr18_47147834_47181364	0/0	t0006	3429	19	0	0	19	0	0	copy fasta	IER3IP1	chr18	47147834	47181364
IER3IP1_chr18_47147834_47181364	0/0	t0007	3432	6	5	0	1	0	0	copy fasta	IER3IP1	chr18	47147834	47181364
IER3IP1_chr18_47147834_47181364	0/0	t0008	3431	4	4	0	0	0	0	copy fasta	IER3IP1	chr18	47147834	47181364
IER3IP1_chr18_47147834_47181364	0/0	t0009	3431	3	3	0	0	0	0	copy fasta	IER3IP1	chr18	47147834	47181364
IER3IP1_chr18_47147834_47181364	0/0	t0010	3431	3	1	1	0	1	0	copy fasta	IER3IP1	chr18	47147834	47181364
IER3IP1_chr18_47147834_47181364	0/0	t0011	3431	3	3	0	0	0	0	copy fasta	IER3IP1	chr18	47147834	47181364
IER3IP1_chr18_47147834_47181364	0/0	t0012	3424	3	0	1	0	1	1	copy fasta	IER3IP1	chr18	47147834	47181364
IER3IP1_chr18_47147834_47181364	0/0	t0013	3431	3	2	1	0	0	0	copy fasta	IER3IP1	chr18	47147834	47181364
IER3IP1_chr18_47147834_47181364	0/0	t0014	3431	2	2	0	0	0	0	copy fasta	IER3IP1	chr18	47147834	47181364
IER3IP1_chr18_47147834_47181364	0/0	t0015	3431	2	2	0	0	0	0	copy fasta	IER3IP1	chr18	47147834	47181364
IER3IP1_chr18_47147834_47181364	0/0	t0016	3431	2	2	0	0	0	0	copy fasta	IER3IP1	chr18	47147834	47181364
IER3IP1_chr18_47147834_47181364	0/0	t0017	3431	1	1	0	0	0	0	copy fasta	IER3IP1	chr18	47147834	47181364
IER3IP1_chr18_47147834_47181364	0/0	t0018	3431	1	1	0	0	0	0	copy fasta	IER3IP1	chr18	47147834	47181364
IER3IP1_chr18_47147834_47181364	0/0	t0019	3431	1	1	0	0	0	0	copy fasta	IER3IP1	chr18	47147834	47181364
IER3IP1_chr18_47147834_47181364	0/0	t0020	3431	1	0	0	1	0	0	copy fasta	IER3IP1	chr18	47147834	47181364
IER3IP1_chr18_47147834_47181364	0/0	t0021	3431	1	1	0	0	0	0	copy fasta	IER3IP1	chr18	47147834	47181364
IER3IP1_chr18_47147834_47181364	0/0	t0022	3432	1	0	0	1	0	0	copy fasta	IER3IP1	chr18	47147834	47181364
IER3IP1_chr18_47147834_47181364	0/0	t0023	3431	1	0	1	0	0	0	copy fasta	IER3IP1	chr18	47147834	47181364
IER3IP1_chr18_47147834_47181364	0/0	t0024	3429	1	0	1	0	0	0	copy fasta	IER3IP1	chr18	47147834	47181364
IER3IP1_chr18_47147834_47181364	0/0	t0025	3429	1	0	1	0	0	0	copy fasta	IER3IP1	chr18	47147834	47181364
IER3IP1_chr18_47147834_47181364	0/0	t0026	3431	1	1	0	0	0	0	copy fasta	IER3IP1	chr18	47147834	47181364
IER3_chr6_30738199_30749547	0/1	t0001	767	342	61	62	174	13	31	copy fasta	IER3	chr6	30738199	30749547
IER3_chr6_30738199_30749547	0/0	t0002	763	41	24	3	8	0	6	copy fasta	IER3	chr6	30738199	30749547
IER3_chr6_30738199_30749547	0/0	t0003	767	40	0	15	12	4	9	copy fasta	IER3	chr6	30738199	30749547
IER3_chr6_30738199_30749547	0/0	t0004	767	17	5	0	12	0	0	copy fasta	IER3	chr6	30738199	30749547
IER3_chr6_30738199_30749547	0/0	t0005	767	5	0	4	0	1	0	copy fasta	IER3	chr6	30738199	30749547
IER3_chr6_30738199_30749547	0/0	t0006	767	2	2	0	0	0	0	copy fasta	IER3	chr6	30738199	30749547
IER3_chr6_30738199_30749547	0/0	t0007	763	1	1	0	0	0	0	copy fasta	IER3	chr6	30738199	30749547
IER3_chr6_30738199_30749547	0/0	t0008	767	1	1	0	0	0	0	copy fasta	IER3	chr6	30738199	30749547
IER5L_chr9_129170552_129183261	0/1	t0001	1500	314	63	53	160	9	28	copy fasta	IER5L	chr9	129170552	129183261
IER5L_chr9_129170552_129183261	0/0	t0002	1496	81	15	17	25	7	17	copy fasta	IER5L	chr9	129170552	129183261
IER5L_chr9_129170552_129183261	0/0	t0003	1500	12	11	1	0	0	0	copy fasta	IER5L	chr9	129170552	129183261
IER5L_chr9_129170552_129183261	0/0	t0004	1500	3	0	3	0	0	0	copy fasta	IER5L	chr9	129170552	129183261
IER5L_chr9_129170552_129183261	1/0	t0005	1496	2	1	0	0	0	0	copy fasta	IER5L	chr9	129170552	129183261
IER5L_chr9_129170552_129183261	0/0	t0006	1500	2	2	0	0	0	0	copy fasta	IER5L	chr9	129170552	129183261
IER5L_chr9_129170552_129183261	0/0	t0007	1500	2	2	0	0	0	0	copy fasta	IER5L	chr9	129170552	129183261
IER5L_chr9_129170552_129183261	0/0	t0008	1500	1	0	0	1	0	0	copy fasta	IER5L	chr9	129170552	129183261
IER5L_chr9_129170552_129183261	0/0	t0009	1500	1	1	0	0	0	0	copy fasta	IER5L	chr9	129170552	129183261
IER5L_chr9_129170552_129183261	0/0	t0010	1500	1	0	0	0	0	1	copy fasta	IER5L	chr9	129170552	129183261