JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IER5L_chr9_129170552_129183261	0/0	t0011	1500	1	1	0	0	0	0	copy fasta	IER5L	chr9	129170552	129183261
IER5L_chr9_129170552_129183261	0/0	t0012	1500	1	1	0	0	0	0	copy fasta	IER5L	chr9	129170552	129183261
IER5L_chr9_129170552_129183261	0/0	t0013	1500	1	0	0	1	0	0	copy fasta	IER5L	chr9	129170552	129183261
IER5L_chr9_129170552_129183261	0/0	t0014	1500	1	0	0	0	0	1	copy fasta	IER5L	chr9	129170552	129183261
IER5L_chr9_129170552_129183261	0/0	t0015	1496	1	0	0	1	0	0	copy fasta	IER5L	chr9	129170552	129183261
IER5L_chr9_129170552_129183261	0/0	t0016	1500	1	0	0	0	0	1	copy fasta	IER5L	chr9	129170552	129183261
IER5L_chr9_129170552_129183261	0/0	t0017	1500	1	1	0	0	0	0	copy fasta	IER5L	chr9	129170552	129183261
IER5_chr1_181083700_181097900	0/0	t0001	3218	136	29	22	60	3	22	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	t0002	3218	78	10	25	36	1	6	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	t0003	3218	52	6	17	15	4	10	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/1	t0004	3218	29	9	1	12	2	4	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	1/0	t0005	3218	13	10	2	0	0	0	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	t0006	3218	6	5	1	0	0	0	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	t0007	3218	5	5	0	0	0	0	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	t0008	3218	4	0	0	4	0	0	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	t0009	3218	3	3	0	0	0	0	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	t0010	3218	3	3	0	0	0	0	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	t0011	3218	3	3	0	0	0	0	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	t0012	3218	3	3	0	0	0	0	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	t0013	3218	3	3	0	0	0	0	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	t0014	3218	3	0	1	0	0	2	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	t0015	3218	3	0	0	0	3	0	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	t0016	3218	2	1	1	0	0	0	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	t0017	3218	2	2	0	0	0	0	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	t0018	3218	2	0	0	2	0	0	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	t0019	3218	2	0	1	1	0	0	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	t0020	3218	1	1	0	0	0	0	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	t0021	3218	1	0	0	0	0	1	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	t0022	3218	1	0	0	1	0	0	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	t0023	3218	1	0	0	1	0	0	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	t0024	3218	1	0	1	0	0	0	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	t0025	3218	1	0	0	1	0	0	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	t0026	3218	1	0	1	0	0	0	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	t0027	3218	1	0	0	1	0	0	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	t0028	3218	1	0	0	1	0	0	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	t0029	3218	1	0	0	1	0	0	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	t0030	3218	1	0	0	1	0	0	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	t0031	3218	1	0	0	1	0	0	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	t0032	3218	1	0	0	1	0	0	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	t0033	3218	1	1	0	0	0	0	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	t0034	3218	1	1	0	0	0	0	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	t0035	3218	1	0	0	0	1	0	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	t0036	3218	1	0	0	0	0	1	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	t0037	3218	1	0	0	1	0	0	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	t0038	3218	1	1	0	0	0	0	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	t0039	3218	1	0	1	0	0	0	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	t0040	3218	1	1	0	0	0	0	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	t0041	3218	1	1	0	0	0	0	copy fasta	IER5	chr1	181083700	181097900
IFFO1_chr12_6534539_6561042	0/1	t0001	958	220	40	50	96	9	24	copy fasta	IFFO1	chr12	6534539	6561042
IFFO1_chr12_6534539_6561042	0/0	t0002	958	90	9	8	61	3	9	copy fasta	IFFO1	chr12	6534539	6561042