JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IFFO1_chr12_6534539_6561042	0/0	t0003	958	68	36	6	17	0	9	copy fasta	IFFO1	chr12	6534539	6561042
IFFO1_chr12_6534539_6561042	0/0	t0004	958	19	0	6	13	0	0	copy fasta	IFFO1	chr12	6534539	6561042
IFFO1_chr12_6534539_6561042	0/0	t0005	958	13	0	8	5	0	0	copy fasta	IFFO1	chr12	6534539	6561042
IFFO1_chr12_6534539_6561042	0/0	t0006	958	10	10	0	0	0	0	copy fasta	IFFO1	chr12	6534539	6561042
IFFO1_chr12_6534539_6561042	1/0	t0007	958	4	0	0	0	0	3	copy fasta	IFFO1	chr12	6534539	6561042
IFFO1_chr12_6534539_6561042	0/0	t0008	957	3	3	0	0	0	0	copy fasta	IFFO1	chr12	6534539	6561042
IFFO1_chr12_6534539_6561042	0/0	t0009	958	2	0	0	2	0	0	copy fasta	IFFO1	chr12	6534539	6561042
IFFO1_chr12_6534539_6561042	0/0	t0010	958	1	1	0	0	0	0	copy fasta	IFFO1	chr12	6534539	6561042
IFFO1_chr12_6534539_6561042	0/0	t0011	958	1	0	1	0	0	0	copy fasta	IFFO1	chr12	6534539	6561042
IFFO1_chr12_6534539_6561042	0/0	t0012	958	1	0	1	0	0	0	copy fasta	IFFO1	chr12	6534539	6561042
IFFO1_chr12_6534539_6561042	0/0	t0013	958	1	0	0	1	0	0	copy fasta	IFFO1	chr12	6534539	6561042
IFFO1_chr12_6534539_6561042	0/0	t0014	958	1	0	1	0	0	0	copy fasta	IFFO1	chr12	6534539	6561042
IFFO1_chr12_6534539_6561042	0/0	t0015	958	1	0	0	1	0	0	copy fasta	IFFO1	chr12	6534539	6561042
IFFO1_chr12_6534539_6561042	0/0	t0016	958	1	0	0	0	0	1	copy fasta	IFFO1	chr12	6534539	6561042
IFFO1_chr12_6534539_6561042	0/0	t0017	958	1	0	1	0	0	0	copy fasta	IFFO1	chr12	6534539	6561042
IFFO1_chr12_6534539_6561042	0/0	t0018	958	1	1	0	0	0	0	copy fasta	IFFO1	chr12	6534539	6561042
IFFO2_chr1_18899280_18961676	0/0	t0001	4626	76	4	12	39	4	17	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0002	4624	55	11	9	31	1	3	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0003	4626	51	2	16	23	2	8	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0004	4624	44	22	4	14	0	4	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0005	4605	12	10	0	2	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0006	4628	11	2	1	4	2	2	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0007	4626	10	0	0	10	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0008	4626	8	3	1	4	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0009	4624	7	0	5	2	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0010	4626	6	0	5	0	1	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0011	4624	5	2	3	0	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0012	4624	5	0	0	5	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0013	4626	4	0	1	0	3	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0014	4619	4	4	0	0	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0015	4628	4	1	1	2	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0016	4622	4	0	2	0	2	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0017	4625	3	0	0	3	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/1	t0018	4626	3	0	2	0	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0019	4622	3	0	0	1	0	2	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0020	4628	3	2	0	0	0	1	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0021	4619	3	0	0	2	0	1	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0022	4624	3	2	1	0	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0023	4619	2	0	0	1	0	1	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0024	4625	2	2	0	0	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0025	4625	2	2	0	0	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0026	4617	2	1	1	0	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0027	4630	2	0	2	0	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0028	4626	2	0	2	0	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0029	4620	2	0	1	1	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0030	4621	2	2	0	0	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0031	4626	2	0	1	0	1	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0032	4628	2	0	0	2	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	1/0	t0033	4626	2	1	0	0	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0034	4605	1	1	0	0	0	0	copy fasta	IFFO2	chr1	18899280	18961676