JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IFFO2_chr1_18899280_18961676	0/0	t0035	4626	1	1	0	0	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0036	4621	1	0	0	0	0	1	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0037	4619	1	1	0	0	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0038	4621	1	1	0	0	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0039	4621	1	1	0	0	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0040	4621	1	1	0	0	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0041	4626	1	0	0	1	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0042	4626	1	0	1	0	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0043	4626	1	1	0	0	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0044	4624	1	0	0	1	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0045	4624	1	0	0	0	0	1	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0046	4624	1	1	0	0	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0047	4624	1	0	0	1	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0048	4609	1	1	0	0	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0049	4625	1	0	1	0	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0050	4605	1	1	0	0	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0051	4619	1	0	0	1	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0052	4625	1	1	0	0	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0053	4628	1	1	0	0	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0054	4626	1	0	1	0	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0055	4624	1	0	0	1	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0056	4622	1	1	0	0	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0057	4624	1	0	1	0	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0058	4620	1	0	0	0	0	1	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0059	4605	1	1	0	0	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0060	4605	1	1	0	0	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0061	4619	1	1	0	0	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0062	4626	1	1	0	0	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	t0063	4626	1	0	0	1	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFI16_chr1_159004907_159060151	1/1	t0001	526	216	64	40	81	7	22	copy fasta	IFI16	chr1	159004907	159060151
IFI16_chr1_159004907_159060151	0/0	t0002	526	93	16	3	59	3	12	copy fasta	IFI16	chr1	159004907	159060151
IFI16_chr1_159004907_159060151	0/0	t0003	526	7	7	0	0	0	0	copy fasta	IFI16	chr1	159004907	159060151
IFI16_chr1_159004907_159060151	0/0	t0004	526	2	1	1	0	0	0	copy fasta	IFI16	chr1	159004907	159060151
IFI16_chr1_159004907_159060151	0/0	t0005	526	1	1	0	0	0	0	copy fasta	IFI16	chr1	159004907	159060151
IFI16_chr1_159004907_159060151	0/0	t0006	542	1	1	0	0	0	0	copy fasta	IFI16	chr1	159004907	159060151
IFI27L1_chr14_94076310_94107709	0/1	t0001	333	426	86	78	197	16	48	copy fasta	IFI27L1	chr14	94076310	94107709
IFI27L1_chr14_94076310_94107709	0/0	t0002	333	7	2	3	0	2	0	copy fasta	IFI27L1	chr14	94076310	94107709
IFI27L1_chr14_94076310_94107709	0/0	t0003	333	6	6	0	0	0	0	copy fasta	IFI27L1	chr14	94076310	94107709
IFI27L1_chr14_94076310_94107709	0/0	t0004	333	2	0	0	2	0	0	copy fasta	IFI27L1	chr14	94076310	94107709
IFI27L1_chr14_94076310_94107709	0/0	t0005	333	2	2	0	0	0	0	copy fasta	IFI27L1	chr14	94076310	94107709
IFI27L1_chr14_94076310_94107709	0/0	t0006	333	1	1	0	0	0	0	copy fasta	IFI27L1	chr14	94076310	94107709
IFI27L1_chr14_94076310_94107709	0/0	t0007	333	1	1	0	0	0	0	copy fasta	IFI27L1	chr14	94076310	94107709
IFI27L1_chr14_94076310_94107709	0/0	t0008	333	1	0	1	0	0	0	copy fasta	IFI27L1	chr14	94076310	94107709
IFI27L1_chr14_94076310_94107709	0/0	t0009	323	1	0	0	1	0	0	copy fasta	IFI27L1	chr14	94076310	94107709
IFI27L2_chr14_94122781_94134604	0/1	t0001	59	431	94	70	204	18	44	copy fasta	IFI27L2	chr14	94122781	94134604
IFI27L2_chr14_94122781_94134604	0/0	t0002	59	2	0	0	2	0	0	copy fasta	IFI27L2	chr14	94122781	94134604
IFI27_chr14_94105736_94121690	0/1	t0001	284	316	61	62	137	18	37	copy fasta	IFI27	chr14	94105736	94121690
IFI27_chr14_94105736_94121690	0/0	t0002	284	128	15	16	88	0	9	copy fasta	IFI27	chr14	94105736	94121690
IFI27_chr14_94105736_94121690	0/0	t0003	284	22	20	2	0	0	0	copy fasta	IFI27	chr14	94105736	94121690
IFI27_chr14_94105736_94121690	0/0	t0004	284	1	0	0	1	0	0	copy fasta	IFI27	chr14	94105736	94121690