JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IFIT1_chr10_89387623_89411487	0/0	t0005	2866	19	4	4	9	1	1	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	t0006	2841	17	15	2	0	0	0	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	t0007	2866	16	0	1	15	0	0	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	t0008	2866	10	10	0	0	0	0	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	t0009	2866	7	5	2	0	0	0	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	t0010	2842	4	0	4	0	0	0	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	t0011	2866	4	4	0	0	0	0	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	t0012	2866	4	4	0	0	0	0	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	t0013	2866	4	4	0	0	0	0	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	t0014	2866	2	2	0	0	0	0	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	t0015	2866	2	0	0	0	2	0	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	t0016	2866	2	2	0	0	0	0	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	t0017	2866	1	1	0	0	0	0	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	t0018	2865	1	0	1	0	0	0	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	t0019	2865	1	0	0	1	0	0	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	t0020	2865	1	0	0	1	0	0	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	t0021	2865	1	0	1	0	0	0	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	t0022	2866	1	1	0	0	0	0	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	t0023	2842	1	0	0	1	0	0	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	t0024	2842	1	0	0	1	0	0	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	t0025	2842	1	0	0	0	0	1	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	t0026	2843	1	0	0	1	0	0	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	t0027	2867	1	1	0	0	0	0	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	t0028	2866	1	1	0	0	0	0	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	t0029	2841	1	0	0	1	0	0	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	t0030	2866	1	0	0	1	0	0	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	t0031	2866	1	0	1	0	0	0	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	t0032	2867	1	0	0	1	0	0	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	t0033	2866	1	0	1	0	0	0	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	t0034	2867	1	1	0	0	0	0	copy fasta	IFIT1	chr10	89387623	89411487
IFIT2_chr10_89297046_89314271	0/1	t0001	1975	307	72	31	164	8	31	copy fasta	IFIT2	chr10	89297046	89314271
IFIT2_chr10_89297046_89314271	0/0	t0002	1975	55	5	18	21	4	7	copy fasta	IFIT2	chr10	89297046	89314271
IFIT2_chr10_89297046_89314271	1/0	t0003	1975	42	2	23	3	4	9	copy fasta	IFIT2	chr10	89297046	89314271
IFIT2_chr10_89297046_89314271	0/0	t0004	1975	9	7	2	0	0	0	copy fasta	IFIT2	chr10	89297046	89314271
IFIT2_chr10_89297046_89314271	0/0	t0005	1975	5	4	1	0	0	0	copy fasta	IFIT2	chr10	89297046	89314271
IFIT2_chr10_89297046_89314271	0/0	t0006	1975	2	0	0	2	0	0	copy fasta	IFIT2	chr10	89297046	89314271
IFIT2_chr10_89297046_89314271	0/0	t0007	1975	2	0	0	2	0	0	copy fasta	IFIT2	chr10	89297046	89314271
IFIT2_chr10_89297046_89314271	0/0	t0008	1975	2	0	1	0	0	1	copy fasta	IFIT2	chr10	89297046	89314271
IFIT2_chr10_89297046_89314271	0/0	t0009	1975	1	0	0	1	0	0	copy fasta	IFIT2	chr10	89297046	89314271
IFIT2_chr10_89297046_89314271	0/0	t0010	1975	1	0	0	1	0	0	copy fasta	IFIT2	chr10	89297046	89314271
IFIT2_chr10_89297046_89314271	0/0	t0011	1975	1	0	0	0	0	1	copy fasta	IFIT2	chr10	89297046	89314271
IFIT2_chr10_89297046_89314271	0/0	t0012	1975	1	0	0	1	0	0	copy fasta	IFIT2	chr10	89297046	89314271
IFIT2_chr10_89297046_89314271	0/0	t0013	1975	1	1	0	0	0	0	copy fasta	IFIT2	chr10	89297046	89314271
IFIT2_chr10_89297046_89314271	0/0	t0014	1975	1	1	0	0	0	0	copy fasta	IFIT2	chr10	89297046	89314271
IFIT2_chr10_89297046_89314271	0/0	t0015	1975	1	0	0	0	0	1	copy fasta	IFIT2	chr10	89297046	89314271
IFIT2_chr10_89297046_89314271	0/0	t0016	1975	1	0	0	1	0	0	copy fasta	IFIT2	chr10	89297046	89314271
IFIT3_chr10_89322997_89345968	0/0	t0001	917	104	9	10	70	3	12	copy fasta	IFIT3	chr10	89322997	89345968
IFIT3_chr10_89322997_89345968	0/1	t0002	919	86	21	14	41	2	7	copy fasta	IFIT3	chr10	89322997	89345968
IFIT3_chr10_89322997_89345968	1/0	t0003	918	68	5	20	25	6	11	copy fasta	IFIT3	chr10	89322997	89345968
IFIT3_chr10_89322997_89345968	0/0	t0004	918	34	4	5	21	1	3	copy fasta	IFIT3	chr10	89322997	89345968