JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IFIT3_chr10_89322997_89345968	0/0	t0005	918	28	13	4	7	1	3	copy fasta	IFIT3	chr10	89322997	89345968
IFIT3_chr10_89322997_89345968	0/0	t0006	915	19	18	1	0	0	0	copy fasta	IFIT3	chr10	89322997	89345968
IFIT3_chr10_89322997_89345968	0/0	t0007	917	11	0	10	0	0	1	copy fasta	IFIT3	chr10	89322997	89345968
IFIT3_chr10_89322997_89345968	0/0	t0008	920	11	1	2	7	1	0	copy fasta	IFIT3	chr10	89322997	89345968
IFIT3_chr10_89322997_89345968	0/0	t0009	919	7	1	1	2	0	3	copy fasta	IFIT3	chr10	89322997	89345968
IFIT3_chr10_89322997_89345968	0/0	t0010	919	4	3	1	0	0	0	copy fasta	IFIT3	chr10	89322997	89345968
IFIT3_chr10_89322997_89345968	0/0	t0011	917	4	0	2	0	0	2	copy fasta	IFIT3	chr10	89322997	89345968
IFIT3_chr10_89322997_89345968	0/0	t0012	917	4	1	0	3	0	0	copy fasta	IFIT3	chr10	89322997	89345968
IFIT3_chr10_89322997_89345968	0/0	t0013	916	3	0	0	3	0	0	copy fasta	IFIT3	chr10	89322997	89345968
IFIT3_chr10_89322997_89345968	0/0	t0014	906	3	3	0	0	0	0	copy fasta	IFIT3	chr10	89322997	89345968
IFIT3_chr10_89322997_89345968	0/0	t0015	916	3	3	0	0	0	0	copy fasta	IFIT3	chr10	89322997	89345968
IFIT3_chr10_89322997_89345968	0/0	t0016	917	2	2	0	0	0	0	copy fasta	IFIT3	chr10	89322997	89345968
IFIT3_chr10_89322997_89345968	0/0	t0017	920	1	1	0	0	0	0	copy fasta	IFIT3	chr10	89322997	89345968
IFIT3_chr10_89322997_89345968	0/0	t0018	918	1	1	0	0	0	0	copy fasta	IFIT3	chr10	89322997	89345968
IFIT3_chr10_89322997_89345968	0/0	t0019	918	1	0	1	0	0	0	copy fasta	IFIT3	chr10	89322997	89345968
IFIT3_chr10_89322997_89345968	0/0	t0020	919	1	0	1	0	0	0	copy fasta	IFIT3	chr10	89322997	89345968
IFIT3_chr10_89322997_89345968	0/0	t0021	917	1	1	0	0	0	0	copy fasta	IFIT3	chr10	89322997	89345968
IFIT3_chr10_89322997_89345968	0/0	t0022	918	1	0	0	1	0	0	copy fasta	IFIT3	chr10	89322997	89345968
IFIT3_chr10_89322997_89345968	0/0	t0023	919	1	0	0	1	0	0	copy fasta	IFIT3	chr10	89322997	89345968
IFIT3_chr10_89322997_89345968	0/0	t0024	917	1	0	0	1	0	0	copy fasta	IFIT3	chr10	89322997	89345968
IFIT3_chr10_89322997_89345968	0/0	t0025	908	1	1	0	0	0	0	copy fasta	IFIT3	chr10	89322997	89345968
IFIT3_chr10_89322997_89345968	0/0	t0026	916	1	1	0	0	0	0	copy fasta	IFIT3	chr10	89322997	89345968
IFIT3_chr10_89322997_89345968	0/0	t0027	906	1	1	0	0	0	0	copy fasta	IFIT3	chr10	89322997	89345968
IFIT5_chr10_89409568_89425997	0/0	t0001	2579	105	4	9	79	3	10	copy fasta	IFIT5	chr10	89409568	89425997
IFIT5_chr10_89409568_89425997	1/0	t0002	2581	95	9	28	38	2	17	copy fasta	IFIT5	chr10	89409568	89425997
IFIT5_chr10_89409568_89425997	0/1	t0003	2574	91	23	15	40	4	8	copy fasta	IFIT5	chr10	89409568	89425997
IFIT5_chr10_89409568_89425997	0/0	t0004	2579	26	14	2	8	1	1	copy fasta	IFIT5	chr10	89409568	89425997
IFIT5_chr10_89409568_89425997	0/0	t0005	2583	17	15	2	0	0	0	copy fasta	IFIT5	chr10	89409568	89425997
IFIT5_chr10_89409568_89425997	0/0	t0006	2581	10	0	0	10	0	0	copy fasta	IFIT5	chr10	89409568	89425997
IFIT5_chr10_89409568_89425997	0/0	t0007	2572	10	10	0	0	0	0	copy fasta	IFIT5	chr10	89409568	89425997
IFIT5_chr10_89409568_89425997	0/0	t0008	2579	7	0	1	6	0	0	copy fasta	IFIT5	chr10	89409568	89425997
IFIT5_chr10_89409568_89425997	0/0	t0009	2581	7	0	3	0	4	0	copy fasta	IFIT5	chr10	89409568	89425997
IFIT5_chr10_89409568_89425997	0/0	t0010	2578	7	5	2	0	0	0	copy fasta	IFIT5	chr10	89409568	89425997
IFIT5_chr10_89409568_89425997	0/0	t0011	2578	7	0	0	7	0	0	copy fasta	IFIT5	chr10	89409568	89425997
IFIT5_chr10_89409568_89425997	0/0	t0012	2578	4	3	1	0	0	0	copy fasta	IFIT5	chr10	89409568	89425997
IFIT5_chr10_89409568_89425997	0/0	t0013	2582	4	0	3	1	0	0	copy fasta	IFIT5	chr10	89409568	89425997
IFIT5_chr10_89409568_89425997	0/0	t0014	2580	4	0	1	0	0	3	copy fasta	IFIT5	chr10	89409568	89425997
IFIT5_chr10_89409568_89425997	0/0	t0015	2577	4	4	0	0	0	0	copy fasta	IFIT5	chr10	89409568	89425997
IFIT5_chr10_89409568_89425997	0/0	t0016	2579	3	0	0	3	0	0	copy fasta	IFIT5	chr10	89409568	89425997
IFIT5_chr10_89409568_89425997	0/0	t0017	2578	2	0	0	2	0	0	copy fasta	IFIT5	chr10	89409568	89425997
IFIT5_chr10_89409568_89425997	0/0	t0018	2581	2	0	2	0	0	0	copy fasta	IFIT5	chr10	89409568	89425997
IFIT5_chr10_89409568_89425997	0/0	t0019	2579	2	0	2	0	0	0	copy fasta	IFIT5	chr10	89409568	89425997
IFIT5_chr10_89409568_89425997	0/0	t0020	2574	2	0	0	0	0	2	copy fasta	IFIT5	chr10	89409568	89425997
IFIT5_chr10_89409568_89425997	0/0	t0021	2581	1	0	1	0	0	0	copy fasta	IFIT5	chr10	89409568	89425997
IFIT5_chr10_89409568_89425997	0/0	t0022	2574	1	1	0	0	0	0	copy fasta	IFIT5	chr10	89409568	89425997
IFIT5_chr10_89409568_89425997	0/0	t0023	2579	1	1	0	0	0	0	copy fasta	IFIT5	chr10	89409568	89425997
IFIT5_chr10_89409568_89425997	0/0	t0024	2581	1	0	1	0	0	0	copy fasta	IFIT5	chr10	89409568	89425997
IFIT5_chr10_89409568_89425997	0/0	t0025	2581	1	0	1	0	0	0	copy fasta	IFIT5	chr10	89409568	89425997
IFIT5_chr10_89409568_89425997	0/0	t0026	2582	1	1	0	0	0	0	copy fasta	IFIT5	chr10	89409568	89425997
IFIT5_chr10_89409568_89425997	0/0	t0027	2579	1	0	0	1	0	0	copy fasta	IFIT5	chr10	89409568	89425997