JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IFITM5_chr11_293200_304526	0/0	t0009	338	2	1	1	0	0	0	copy fasta	IFITM5	chr11	293200	304526
IFITM5_chr11_293200_304526	0/0	t0010	338	2	0	0	2	0	0	copy fasta	IFITM5	chr11	293200	304526
IFITM5_chr11_293200_304526	0/0	t0011	338	1	0	0	1	0	0	copy fasta	IFITM5	chr11	293200	304526
IFITM5_chr11_293200_304526	0/0	t0012	338	1	0	0	0	0	1	copy fasta	IFITM5	chr11	293200	304526
IFNA10_chr9_21201181_21212143	1/0	t0001	394	263	50	56	106	8	42	copy fasta	IFNA10	chr9	21201181	21212143
IFNA10_chr9_21201181_21212143	0/0	t0002	394	150	27	22	94	5	2	copy fasta	IFNA10	chr9	21201181	21212143
IFNA10_chr9_21201181_21212143	0/0	t0003	394	21	5	1	14	0	1	copy fasta	IFNA10	chr9	21201181	21212143
IFNA10_chr9_21201181_21212143	0/0	t0004	394	10	6	3	0	1	0	copy fasta	IFNA10	chr9	21201181	21212143
IFNA10_chr9_21201181_21212143	0/0	t0005	394	3	3	0	0	0	0	copy fasta	IFNA10	chr9	21201181	21212143
IFNA10_chr9_21201181_21212143	0/0	t0006	394	3	2	1	0	0	0	copy fasta	IFNA10	chr9	21201181	21212143
IFNA10_chr9_21201181_21212143	0/0	t0007	394	1	1	0	0	0	0	copy fasta	IFNA10	chr9	21201181	21212143
IFNA10_chr9_21201181_21212143	0/0	t0008	394	1	0	0	0	0	1	copy fasta	IFNA10	chr9	21201181	21212143
IFNA10_chr9_21201181_21212143	0/0	t0009	394	1	1	0	0	0	0	copy fasta	IFNA10	chr9	21201181	21212143
IFNA10_chr9_21201181_21212143	0/0	t0010	394	1	0	1	0	0	0	copy fasta	IFNA10	chr9	21201181	21212143
IFNA10_chr9_21201181_21212143	0/0	t0011	394	1	1	0	0	0	0	copy fasta	IFNA10	chr9	21201181	21212143
IFNA10_chr9_21201181_21212143	0/0	t0012	394	1	0	0	1	0	0	copy fasta	IFNA10	chr9	21201181	21212143
IFNA10_chr9_21201181_21212143	0/0	t0013	394	1	0	0	1	0	0	copy fasta	IFNA10	chr9	21201181	21212143
IFNA13_chr9_21362372_21373057	1/1	t0001	114	440	82	81	214	15	46	copy fasta	IFNA13	chr9	21362372	21373057
IFNA13_chr9_21362372_21373057	0/0	t0002	114	14	14	0	0	0	0	copy fasta	IFNA13	chr9	21362372	21373057
IFNA13_chr9_21362372_21373057	0/0	t0003	115	6	0	0	6	0	0	copy fasta	IFNA13	chr9	21362372	21373057
IFNA13_chr9_21362372_21373057	0/0	t0004	114	4	0	3	0	1	0	copy fasta	IFNA13	chr9	21362372	21373057
IFNA13_chr9_21362372_21373057	0/0	t0005	114	1	0	0	1	0	0	copy fasta	IFNA13	chr9	21362372	21373057
IFNA13_chr9_21362372_21373057	0/0	t0006	114	1	0	0	1	0	0	copy fasta	IFNA13	chr9	21362372	21373057
IFNA14_chr9_21234002_21245005	1/1	t0001	435	423	94	78	186	14	49	copy fasta	IFNA14	chr9	21234002	21245005
IFNA14_chr9_21234002_21245005	0/0	t0002	435	22	0	0	21	0	1	copy fasta	IFNA14	chr9	21234002	21245005
IFNA14_chr9_21234002_21245005	0/0	t0003	435	1	0	0	1	0	0	copy fasta	IFNA14	chr9	21234002	21245005
IFNA14_chr9_21234002_21245005	0/0	t0004	435	1	1	0	0	0	0	copy fasta	IFNA14	chr9	21234002	21245005
IFNA14_chr9_21234002_21245005	0/0	t0005	435	1	1	0	0	0	0	copy fasta	IFNA14	chr9	21234002	21245005
IFNA14_chr9_21234002_21245005	0/0	t0006	435	1	1	0	0	0	0	copy fasta	IFNA14	chr9	21234002	21245005
IFNA14_chr9_21234002_21245005	0/0	t0007	435	1	1	0	0	0	0	copy fasta	IFNA14	chr9	21234002	21245005
IFNA16_chr9_21211373_21222311	1/1	t0001	370	421	86	78	197	13	45	copy fasta	IFNA16	chr9	21211373	21222311
IFNA16_chr9_21211373_21222311	0/0	t0002	370	38	9	4	23	1	1	copy fasta	IFNA16	chr9	21211373	21222311
IFNA16_chr9_21211373_21222311	0/0	t0003	370	4	4	0	0	0	0	copy fasta	IFNA16	chr9	21211373	21222311
IFNA16_chr9_21211373_21222311	0/0	t0004	370	1	1	0	0	0	0	copy fasta	IFNA16	chr9	21211373	21222311
IFNA17_chr9_21222243_21233222	1/1	t0001	411	269	63	62	85	11	46	copy fasta	IFNA17	chr9	21222243	21233222
IFNA17_chr9_21222243_21233222	0/0	t0002	411	170	30	21	112	5	2	copy fasta	IFNA17	chr9	21222243	21233222
IFNA17_chr9_21222243_21233222	0/0	t0003	411	9	0	0	9	0	0	copy fasta	IFNA17	chr9	21222243	21233222
IFNA17_chr9_21222243_21233222	0/0	t0004	411	5	5	0	0	0	0	copy fasta	IFNA17	chr9	21222243	21233222
IFNA17_chr9_21222243_21233222	0/0	t0005	411	2	2	0	0	0	0	copy fasta	IFNA17	chr9	21222243	21233222
IFNA17_chr9_21222243_21233222	0/0	t0006	411	1	0	0	1	0	0	copy fasta	IFNA17	chr9	21222243	21233222
IFNA17_chr9_21222243_21233222	0/0	t0007	411	1	0	1	0	0	0	copy fasta	IFNA17	chr9	21222243	21233222
IFNA17_chr9_21222243_21233222	0/0	t0008	411	1	0	0	1	0	0	copy fasta	IFNA17	chr9	21222243	21233222
IFNA1_chr9_21435439_21446316	1/1	t0001	309	369	69	66	176	14	42	copy fasta	IFNA1	chr9	21435439	21446316
IFNA1_chr9_21435439_21446316	0/0	t0002	308	33	6	6	21	0	0	copy fasta	IFNA1	chr9	21435439	21446316
IFNA1_chr9_21435439_21446316	0/0	t0003	309	18	1	4	8	1	4	copy fasta	IFNA1	chr9	21435439	21446316
IFNA1_chr9_21435439_21446316	0/0	t0004	308	11	11	0	0	0	0	copy fasta	IFNA1	chr9	21435439	21446316
IFNA1_chr9_21435439_21446316	0/0	t0005	309	9	9	0	0	0	0	copy fasta	IFNA1	chr9	21435439	21446316
IFNA1_chr9_21435439_21446316	0/0	t0006	309	4	0	3	0	1	0	copy fasta	IFNA1	chr9	21435439	21446316
IFNA1_chr9_21435439_21446316	0/0	t0007	308	2	1	1	0	0	0	copy fasta	IFNA1	chr9	21435439	21446316
IFNA1_chr9_21435439_21446316	0/0	t0008	309	1	0	0	0	0	1	copy fasta	IFNA1	chr9	21435439	21446316