JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IFNA1_chr9_21435439_21446316	0/0	t0009	309	1	0	0	0	0	1	copy fasta	IFNA1	chr9	21435439	21446316
IFNA1_chr9_21435439_21446316	0/0	t0010	308	1	0	0	1	0	0	copy fasta	IFNA1	chr9	21435439	21446316
IFNA1_chr9_21435439_21446316	0/0	t0011	309	1	1	0	0	0	0	copy fasta	IFNA1	chr9	21435439	21446316
IFNA21_chr9_21160637_21171660	1/1	t0001	455	317	73	62	121	11	48	copy fasta	IFNA21	chr9	21160637	21171660
IFNA21_chr9_21160637_21171660	0/0	t0002	451	136	19	18	95	3	1	copy fasta	IFNA21	chr9	21160637	21171660
IFNA21_chr9_21160637_21171660	0/0	t0003	455	3	2	1	0	0	0	copy fasta	IFNA21	chr9	21160637	21171660
IFNA21_chr9_21160637_21171660	0/0	t0004	455	3	0	3	0	0	0	copy fasta	IFNA21	chr9	21160637	21171660
IFNA21_chr9_21160637_21171660	0/0	t0005	451	2	0	2	0	0	0	copy fasta	IFNA21	chr9	21160637	21171660
IFNA21_chr9_21160637_21171660	0/0	t0006	451	2	0	0	2	0	0	copy fasta	IFNA21	chr9	21160637	21171660
IFNA21_chr9_21160637_21171660	0/0	t0007	455	1	0	0	0	0	1	copy fasta	IFNA21	chr9	21160637	21171660
IFNA2_chr9_21379255_21390398	1/0	t0001	578	435	86	68	231	14	35	copy fasta	IFNA2	chr9	21379255	21390398
IFNA2_chr9_21379255_21390398	0/1	t0002	578	32	4	13	0	2	12	copy fasta	IFNA2	chr9	21379255	21390398
IFNA2_chr9_21379255_21390398	0/0	t0003	578	6	1	3	2	0	0	copy fasta	IFNA2	chr9	21379255	21390398
IFNA2_chr9_21379255_21390398	0/0	t0004	578	2	2	0	0	0	0	copy fasta	IFNA2	chr9	21379255	21390398
IFNA2_chr9_21379255_21390398	0/0	t0005	578	1	1	0	0	0	0	copy fasta	IFNA2	chr9	21379255	21390398
IFNA2_chr9_21379255_21390398	0/0	t0006	578	1	0	0	0	0	1	copy fasta	IFNA2	chr9	21379255	21390398
IFNA2_chr9_21379255_21390398	0/0	t0007	578	1	0	0	1	0	0	copy fasta	IFNA2	chr9	21379255	21390398
IFNA4_chr9_21181618_21192587	1/1	t0001	401	277	58	52	112	11	42	copy fasta	IFNA4	chr9	21181618	21192587
IFNA4_chr9_21181618_21192587	0/0	t0002	401	141	33	20	82	5	1	copy fasta	IFNA4	chr9	21181618	21192587
IFNA4_chr9_21181618_21192587	0/0	t0003	401	3	0	0	0	0	3	copy fasta	IFNA4	chr9	21181618	21192587
IFNA4_chr9_21181618_21192587	0/0	t0004	401	2	2	0	0	0	0	copy fasta	IFNA4	chr9	21181618	21192587
IFNA4_chr9_21181618_21192587	0/0	t0005	401	2	1	1	0	0	0	copy fasta	IFNA4	chr9	21181618	21192587
IFNA4_chr9_21181618_21192587	0/0	t0006	401	1	0	0	1	0	0	copy fasta	IFNA4	chr9	21181618	21192587
IFNA4_chr9_21181618_21192587	0/0	t0007	401	1	0	1	0	0	0	copy fasta	IFNA4	chr9	21181618	21192587
IFNA4_chr9_21181618_21192587	0/0	t0008	401	1	0	0	1	0	0	copy fasta	IFNA4	chr9	21181618	21192587
IFNA5_chr9_21299326_21310313	1/1	t0001	419	449	100	77	212	16	42	copy fasta	IFNA5	chr9	21299326	21310313
IFNA5_chr9_21299326_21310313	0/0	t0002	419	2	0	0	0	0	2	copy fasta	IFNA5	chr9	21299326	21310313
IFNA5_chr9_21299326_21310313	0/0	t0003	419	1	0	0	1	0	0	copy fasta	IFNA5	chr9	21299326	21310313
IFNA5_chr9_21299326_21310313	0/0	t0004	419	1	0	1	0	0	0	copy fasta	IFNA5	chr9	21299326	21310313
IFNA5_chr9_21299326_21310313	0/0	t0005	419	1	0	0	1	0	0	copy fasta	IFNA5	chr9	21299326	21310313
IFNA7_chr9_21196469_21207205	1/1	t0001	168	456	100	84	210	16	44	copy fasta	IFNA7	chr9	21196469	21207205
IFNA8_chr9_21404117_21415185	1/0	t0001	500	329	52	53	185	15	23	copy fasta	IFNA8	chr9	21404117	21415185
IFNA8_chr9_21404117_21415185	0/0	t0002	496	60	11	8	33	0	8	copy fasta	IFNA8	chr9	21404117	21415185
IFNA8_chr9_21404117_21415185	0/0	t0003	500	30	24	2	4	0	0	copy fasta	IFNA8	chr9	21404117	21415185
IFNA8_chr9_21404117_21415185	0/1	t0004	496	29	5	10	0	2	11	copy fasta	IFNA8	chr9	21404117	21415185
IFNA8_chr9_21404117_21415185	0/0	t0005	500	4	0	3	0	1	0	copy fasta	IFNA8	chr9	21404117	21415185
IFNA8_chr9_21404117_21415185	0/0	t0006	500	2	2	0	0	0	0	copy fasta	IFNA8	chr9	21404117	21415185
IFNA8_chr9_21404117_21415185	0/0	t0007	500	1	1	0	0	0	0	copy fasta	IFNA8	chr9	21404117	21415185
IFNA8_chr9_21404117_21415185	0/0	t0008	500	1	0	0	1	0	0	copy fasta	IFNA8	chr9	21404117	21415185
IFNA8_chr9_21404117_21415185	0/0	t0009	496	1	1	0	0	0	0	copy fasta	IFNA8	chr9	21404117	21415185
IFNA8_chr9_21404117_21415185	0/0	t0010	500	1	0	0	1	0	0	copy fasta	IFNA8	chr9	21404117	21415185
IFNAR1_chr21_33319970_33364864	0/0	t0001	4402	128	12	31	69	3	13	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	t0002	4397	79	10	11	42	3	13	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	1/0	t0003	4402	23	10	1	4	3	4	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	t0004	4406	8	8	0	0	0	0	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	t0005	4402	7	0	2	0	1	4	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	t0006	4398	6	0	3	3	0	0	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	t0007	4402	6	0	0	6	0	0	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	t0008	4402	4	0	2	2	0	0	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	t0009	4404	4	3	1	0	0	0	copy fasta	IFNAR1	chr21	33319970	33364864