JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IFNAR1_chr21_33319970_33364864	0/0	t0010	4403	4	4	0	0	0	0	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	t0011	4403	4	0	0	2	0	2	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	t0012	4408	4	4	0	0	0	0	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	t0013	4402	4	3	1	0	0	0	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	t0014	4399	3	3	0	0	0	0	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	t0015	4402	3	3	0	0	0	0	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	t0016	4397	3	2	1	0	0	0	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	t0017	4404	2	2	0	0	0	0	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	t0018	4402	2	1	1	0	0	0	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	t0019	4402	2	0	1	0	1	0	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	t0020	4417	2	1	1	0	0	0	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	t0021	4402	1	0	0	0	0	1	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	t0022	4402	1	0	0	0	0	1	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	t0023	4406	1	1	0	0	0	0	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	t0024	4397	1	0	0	0	1	0	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	t0025	4397	1	0	0	1	0	0	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	t0026	4397	1	0	0	1	0	0	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	t0027	4402	1	1	0	0	0	0	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	t0028	4402	1	1	0	0	0	0	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	t0029	4402	1	0	0	1	0	0	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	t0030	4404	1	1	0	0	0	0	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	t0031	4406	1	1	0	0	0	0	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	t0032	4406	1	1	0	0	0	0	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	t0033	4397	1	0	0	1	0	0	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	t0034	4402	1	0	0	1	0	0	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	t0035	4402	1	1	0	0	0	0	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	t0036	4403	1	1	0	0	0	0	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	t0037	4405	1	1	0	0	0	0	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	t0038	4403	1	1	0	0	0	0	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	t0039	4402	1	1	0	0	0	0	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	t0040	4397	1	0	0	1	0	0	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	t0041	4416	1	1	0	0	0	0	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	t0042	4417	1	1	0	0	0	0	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	t0043	4416	1	1	0	0	0	0	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	t0044	4418	1	1	0	0	0	0	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	t0045	4416	1	1	0	0	0	0	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR2_chr21_33224938_33270664	0/0	t0001	2526	84	9	21	46	2	6	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	t0002	2526	83	5	2	65	2	9	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	1/0	t0003	2527	61	12	9	24	6	9	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	t0004	2527	51	9	16	15	1	10	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	t0005	2526	37	20	8	5	1	3	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	t0006	2527	30	7	4	16	0	3	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	t0007	2526	8	7	1	0	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	t0008	2528	6	1	1	2	1	1	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	t0009	2528	5	3	1	0	0	1	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	t0010	2526	4	0	0	4	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	t0011	2526	4	4	0	0	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/1	t0012	2526	3	0	0	1	0	1	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	t0013	2526	3	0	0	1	2	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	t0014	2526	3	3	0	0	0	0	copy fasta	IFNAR2	chr21	33224938	33270664