JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IFNAR2_chr21_33224938_33270664	0/0	t0015	2527	3	2	1	0	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	t0016	2526	3	0	3	0	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	t0017	2525	2	0	1	0	0	1	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	t0018	2526	2	2	0	0	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	t0019	2526	2	0	0	2	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	t0020	2527	2	0	2	0	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	t0021	2525	2	1	1	0	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	t0022	2525	2	0	0	2	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	t0023	2526	1	0	0	1	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	t0024	2526	1	1	0	0	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	t0025	2526	1	0	0	1	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	t0026	2526	1	0	1	0	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	t0027	2527	1	0	0	1	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	t0028	2527	1	1	0	0	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	t0029	2526	1	0	0	1	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	t0030	2527	1	0	0	0	1	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	t0031	2525	1	1	0	0	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	t0032	2526	1	1	0	0	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	t0033	2526	1	1	0	0	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	t0034	2527	1	0	0	1	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	t0035	2527	1	1	0	0	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	t0036	2528	1	1	0	0	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	t0037	2526	1	1	0	0	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	t0038	2527	1	1	0	0	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	t0039	2526	1	0	1	0	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	t0040	2526	1	0	1	0	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	t0041	2526	1	0	0	1	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	t0042	2526	1	1	0	0	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	t0043	2527	1	0	0	1	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	t0044	2527	1	1	0	0	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	t0045	2527	1	0	0	1	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	t0046	2527	1	0	0	1	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNB1_chr9_21072104_21082942	1/1	t0001	276	443	90	70	219	18	44	copy fasta	IFNB1	chr9	21072104	21082942
IFNB1_chr9_21072104_21082942	0/0	t0002	276	8	0	0	8	0	0	copy fasta	IFNB1	chr9	21072104	21082942
IFNB1_chr9_21072104_21082942	0/0	t0003	276	6	6	0	0	0	0	copy fasta	IFNB1	chr9	21072104	21082942
IFNB1_chr9_21072104_21082942	0/0	t0004	276	1	0	0	1	0	0	copy fasta	IFNB1	chr9	21072104	21082942
IFNE_chr9_21475839_21487313	0/0	t0001	849	156	18	13	111	3	11	copy fasta	IFNE	chr9	21475839	21487313
IFNE_chr9_21475839_21487313	1/1	t0002	849	142	42	35	42	8	13	copy fasta	IFNE	chr9	21475839	21487313
IFNE_chr9_21475839_21487313	0/0	t0003	846	89	16	13	46	1	13	copy fasta	IFNE	chr9	21475839	21487313
IFNE_chr9_21475839_21487313	0/0	t0004	850	57	17	19	6	4	11	copy fasta	IFNE	chr9	21475839	21487313
IFNE_chr9_21475839_21487313	0/0	t0005	849	2	2	0	0	0	0	copy fasta	IFNE	chr9	21475839	21487313
IFNE_chr9_21475839_21487313	0/0	t0006	849	1	0	0	1	0	0	copy fasta	IFNE	chr9	21475839	21487313
IFNE_chr9_21475839_21487313	0/0	t0007	849	1	1	0	0	0	0	copy fasta	IFNE	chr9	21475839	21487313
IFNE_chr9_21475839_21487313	0/0	t0008	849	1	1	0	0	0	0	copy fasta	IFNE	chr9	21475839	21487313
IFNE_chr9_21475839_21487313	0/0	t0009	850	1	1	0	0	0	0	copy fasta	IFNE	chr9	21475839	21487313
IFNGR1_chr6_137192485_137224385	1/1	t0001	605	187	34	46	80	8	17	copy fasta	IFNGR1	chr6	137192485	137224385
IFNGR1_chr6_137192485_137224385	0/0	t0002	605	158	44	28	71	4	11	copy fasta	IFNGR1	chr6	137192485	137224385
IFNGR1_chr6_137192485_137224385	0/0	t0003	605	25	0	1	12	0	12	copy fasta	IFNGR1	chr6	137192485	137224385
IFNGR1_chr6_137192485_137224385	0/0	t0004	604	5	1	0	3	0	1	copy fasta	IFNGR1	chr6	137192485	137224385
IFNGR1_chr6_137192485_137224385	0/0	t0005	604	3	3	0	0	0	0	copy fasta	IFNGR1	chr6	137192485	137224385