JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IFNGR1_chr6_137192485_137224385	0/0	t0006	605	3	0	0	0	0	3	copy fasta	IFNGR1	chr6	137192485	137224385
IFNGR1_chr6_137192485_137224385	0/0	t0007	604	2	2	0	0	0	0	copy fasta	IFNGR1	chr6	137192485	137224385
IFNGR1_chr6_137192485_137224385	0/0	t0008	604	2	1	0	1	0	0	copy fasta	IFNGR1	chr6	137192485	137224385
IFNGR1_chr6_137192485_137224385	0/0	t0009	605	2	0	0	2	0	0	copy fasta	IFNGR1	chr6	137192485	137224385
IFNGR1_chr6_137192485_137224385	0/0	t0010	605	1	0	1	0	0	0	copy fasta	IFNGR1	chr6	137192485	137224385
IFNGR1_chr6_137192485_137224385	0/0	t0011	605	1	0	0	1	0	0	copy fasta	IFNGR1	chr6	137192485	137224385
IFNGR1_chr6_137192485_137224385	0/0	t0012	605	1	1	0	0	0	0	copy fasta	IFNGR1	chr6	137192485	137224385
IFNGR2_chr21_33398413_33442516	0/0	t0001	686	174	74	23	61	4	12	copy fasta	IFNGR2	chr21	33398413	33442516
IFNGR2_chr21_33398413_33442516	0/0	t0002	686	90	1	24	48	6	11	copy fasta	IFNGR2	chr21	33398413	33442516
IFNGR2_chr21_33398413_33442516	0/0	t0003	686	89	14	15	37	6	17	copy fasta	IFNGR2	chr21	33398413	33442516
IFNGR2_chr21_33398413_33442516	1/1	t0004	686	14	0	7	1	2	2	copy fasta	IFNGR2	chr21	33398413	33442516
IFNGR2_chr21_33398413_33442516	0/0	t0005	686	9	0	0	9	0	0	copy fasta	IFNGR2	chr21	33398413	33442516
IFNGR2_chr21_33398413_33442516	0/0	t0006	686	7	6	1	0	0	0	copy fasta	IFNGR2	chr21	33398413	33442516
IFNGR2_chr21_33398413_33442516	0/0	t0007	686	1	1	0	0	0	0	copy fasta	IFNGR2	chr21	33398413	33442516
IFNGR2_chr21_33398413_33442516	0/0	t0008	686	1	0	0	1	0	0	copy fasta	IFNGR2	chr21	33398413	33442516
IFNGR2_chr21_33398413_33442516	0/0	t0009	686	1	0	0	1	0	0	copy fasta	IFNGR2	chr21	33398413	33442516
IFNG_chr12_68149768_68164740	1/1	t0001	711	399	78	76	187	12	44	copy fasta	IFNG	chr12	68149768	68164740
IFNG_chr12_68149768_68164740	0/0	t0002	711	9	9	0	0	0	0	copy fasta	IFNG	chr12	68149768	68164740
IFNG_chr12_68149768_68164740	0/0	t0003	707	3	1	2	0	0	0	copy fasta	IFNG	chr12	68149768	68164740
IFNG_chr12_68149768_68164740	0/0	t0004	711	3	3	0	0	0	0	copy fasta	IFNG	chr12	68149768	68164740
IFNG_chr12_68149768_68164740	0/0	t0005	711	3	3	0	0	0	0	copy fasta	IFNG	chr12	68149768	68164740
IFNG_chr12_68149768_68164740	0/0	t0006	711	2	2	0	0	0	0	copy fasta	IFNG	chr12	68149768	68164740
IFNG_chr12_68149768_68164740	0/0	t0007	711	2	0	0	2	0	0	copy fasta	IFNG	chr12	68149768	68164740
IFNG_chr12_68149768_68164740	0/0	t0008	711	1	0	0	1	0	0	copy fasta	IFNG	chr12	68149768	68164740
IFNK_chr9_27519290_27531498	1/0	t0001	540	276	60	58	121	9	27	copy fasta	IFNK	chr9	27519290	27531498
IFNK_chr9_27519290_27531498	0/1	t0002	540	93	15	21	42	3	11	copy fasta	IFNK	chr9	27519290	27531498
IFNK_chr9_27519290_27531498	0/0	t0003	540	49	1	2	34	2	10	copy fasta	IFNK	chr9	27519290	27531498
IFNK_chr9_27519290_27531498	0/0	t0004	542	9	8	1	0	0	0	copy fasta	IFNK	chr9	27519290	27531498
IFNK_chr9_27519290_27531498	0/0	t0005	541	7	5	0	0	0	2	copy fasta	IFNK	chr9	27519290	27531498
IFNK_chr9_27519290_27531498	0/0	t0006	540	4	3	1	0	0	0	copy fasta	IFNK	chr9	27519290	27531498
IFNK_chr9_27519290_27531498	0/0	t0007	542	2	2	0	0	0	0	copy fasta	IFNK	chr9	27519290	27531498
IFNK_chr9_27519290_27531498	0/0	t0008	540	2	0	0	2	0	0	copy fasta	IFNK	chr9	27519290	27531498
IFNK_chr9_27519290_27531498	0/0	t0009	540	2	0	0	2	0	0	copy fasta	IFNK	chr9	27519290	27531498
IFNK_chr9_27519290_27531498	0/0	t0010	541	1	0	1	0	0	0	copy fasta	IFNK	chr9	27519290	27531498
IFNK_chr9_27519290_27531498	0/0	t0011	541	1	1	0	0	0	0	copy fasta	IFNK	chr9	27519290	27531498
IFNK_chr9_27519290_27531498	0/0	t0012	540	1	1	0	0	0	0	copy fasta	IFNK	chr9	27519290	27531498
IFNK_chr9_27519290_27531498	0/0	t0013	540	1	0	0	1	0	0	copy fasta	IFNK	chr9	27519290	27531498
IFNL1_chr19_39291407_39303673	1/1	t0001	173	301	91	54	104	16	34	copy fasta	IFNL1	chr19	39291407	39303673
IFNL1_chr19_39291407_39303673	0/0	t0002	173	1	1	0	0	0	0	copy fasta	IFNL1	chr19	39291407	39303673
IFNL2_chr19_39263396_39275188	1/1	t0001	349	419	88	76	191	18	44	copy fasta	IFNL2	chr19	39263396	39275188
IFNL2_chr19_39263396_39275188	0/0	t0002	349	1	0	0	1	0	0	copy fasta	IFNL2	chr19	39263396	39275188
IFNL2_chr19_39263396_39275188	0/0	t0003	349	1	1	0	0	0	0	copy fasta	IFNL2	chr19	39263396	39275188
IFNL2_chr19_39263396_39275188	0/0	t0004	349	1	1	0	0	0	0	copy fasta	IFNL2	chr19	39263396	39275188
IFNL3_chr19_39238553_39250006	1/1	t0001	119	263	25	57	137	4	38	copy fasta	IFNL3	chr19	39238553	39250006
IFNL3_chr19_39238553_39250006	0/0	t0002	119	111	58	16	19	8	10	copy fasta	IFNL3	chr19	39238553	39250006
IFNL3_chr19_39238553_39250006	0/0	t0003	119	7	7	0	0	0	0	copy fasta	IFNL3	chr19	39238553	39250006
IFNL3_chr19_39238553_39250006	0/0	t0004	119	7	0	7	0	0	0	copy fasta	IFNL3	chr19	39238553	39250006
IFNL3_chr19_39238553_39250006	0/0	t0005	119	2	2	0	0	0	0	copy fasta	IFNL3	chr19	39238553	39250006
IFNLR1_chr1_24149168_24192289	0/0	t0001	3002	99	33	27	15	8	16	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/1	t0002	3002	75	8	16	39	3	8	copy fasta	IFNLR1	chr1	24149168	24192289