JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IFNLR1_chr1_24149168_24192289	0/0	t0003	3002	35	1	5	21	0	8	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	t0004	3002	30	2	7	17	2	2	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	t0005	3002	30	0	2	26	0	2	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	t0006	3004	22	11	7	0	1	3	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	t0007	3002	14	0	0	12	0	2	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	t0008	3002	13	1	0	11	0	1	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	t0009	3002	11	0	0	11	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	t0010	3002	9	0	0	8	1	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	t0011	3004	6	4	2	0	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	t0012	3004	5	3	2	0	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	t0013	3002	3	1	1	0	1	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	t0014	3004	2	2	0	0	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	t0015	3002	2	0	0	2	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	t0016	3002	2	2	0	0	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	t0017	3002	2	0	0	2	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	t0018	3002	2	2	0	0	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	t0019	3004	2	1	0	0	0	1	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	t0020	3004	2	2	0	0	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	t0021	3004	2	2	0	0	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	t0022	3002	1	0	0	0	0	1	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	t0023	3002	1	0	0	1	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	t0024	3004	1	1	0	0	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	t0025	3002	1	0	0	0	0	1	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	t0026	3002	1	0	1	0	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	t0027	3004	1	1	0	0	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	1/0	t0028	3004	1	0	0	0	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	t0029	3002	1	1	0	0	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	t0030	3002	1	0	0	1	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	t0031	3002	1	1	0	0	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	t0032	3002	1	1	0	0	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	t0033	3004	1	1	0	0	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	t0034	3002	1	1	0	0	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	t0035	3002	1	0	1	0	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	t0036	3002	1	1	0	0	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	t0037	3002	1	1	0	0	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	t0038	3002	1	0	0	0	0	1	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	t0039	3002	1	1	0	0	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	t0040	3004	1	1	0	0	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	t0041	3002	1	0	0	1	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	t0042	3002	1	1	0	0	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	t0043	3004	1	1	0	0	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	t0044	3002	1	0	0	1	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	t0045	3002	1	0	1	0	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	t0046	3002	1	1	0	0	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	t0047	3002	1	1	0	0	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	t0048	3004	1	1	0	0	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	t0049	3002	1	1	0	0	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNW1_chr9_21135632_21146832	1/0	t0001	614	372	81	65	183	14	28	copy fasta	IFNW1	chr9	21135632	21146832
IFNW1_chr9_21135632_21146832	0/1	t0002	614	105	18	21	39	4	22	copy fasta	IFNW1	chr9	21135632	21146832
IFNW1_chr9_21135632_21146832	0/0	t0003	614	2	0	0	2	0	0	copy fasta	IFNW1	chr9	21135632	21146832