JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IFNW1_chr9_21135632_21146832	0/0	t0004	614	1	1	0	0	0	0	copy fasta	IFNW1	chr9	21135632	21146832
IFRD1_chr7_112445460_112482203	1/0	t0001	1914	117	10	16	75	2	13	copy fasta	IFRD1	chr7	112445460	112482203
IFRD1_chr7_112445460_112482203	0/0	t0002	1914	71	18	10	32	7	4	copy fasta	IFRD1	chr7	112445460	112482203
IFRD1_chr7_112445460_112482203	0/1	t0003	1914	49	26	16	0	3	3	copy fasta	IFRD1	chr7	112445460	112482203
IFRD1_chr7_112445460_112482203	0/0	t0004	1914	45	3	13	15	0	14	copy fasta	IFRD1	chr7	112445460	112482203
IFRD1_chr7_112445460_112482203	0/0	t0005	1914	32	10	3	12	1	6	copy fasta	IFRD1	chr7	112445460	112482203
IFRD1_chr7_112445460_112482203	0/0	t0006	1914	10	9	0	0	0	1	copy fasta	IFRD1	chr7	112445460	112482203
IFRD1_chr7_112445460_112482203	0/0	t0007	1914	9	3	4	0	1	1	copy fasta	IFRD1	chr7	112445460	112482203
IFRD1_chr7_112445460_112482203	0/0	t0008	1914	5	0	4	1	0	0	copy fasta	IFRD1	chr7	112445460	112482203
IFRD1_chr7_112445460_112482203	0/0	t0009	1914	5	0	2	0	2	1	copy fasta	IFRD1	chr7	112445460	112482203
IFRD1_chr7_112445460_112482203	0/0	t0010	1914	4	3	1	0	0	0	copy fasta	IFRD1	chr7	112445460	112482203
IFRD1_chr7_112445460_112482203	0/0	t0011	1914	4	0	0	4	0	0	copy fasta	IFRD1	chr7	112445460	112482203
IFRD1_chr7_112445460_112482203	0/0	t0012	1914	3	1	1	0	0	1	copy fasta	IFRD1	chr7	112445460	112482203
IFRD1_chr7_112445460_112482203	0/0	t0013	1914	3	3	0	0	0	0	copy fasta	IFRD1	chr7	112445460	112482203
IFRD1_chr7_112445460_112482203	0/0	t0014	1901	3	0	0	3	0	0	copy fasta	IFRD1	chr7	112445460	112482203
IFRD1_chr7_112445460_112482203	0/0	t0015	1914	3	2	1	0	0	0	copy fasta	IFRD1	chr7	112445460	112482203
IFRD1_chr7_112445460_112482203	0/0	t0016	1914	2	2	0	0	0	0	copy fasta	IFRD1	chr7	112445460	112482203
IFRD1_chr7_112445460_112482203	0/0	t0017	1914	2	1	1	0	0	0	copy fasta	IFRD1	chr7	112445460	112482203
IFRD1_chr7_112445460_112482203	0/0	t0018	1914	2	2	0	0	0	0	copy fasta	IFRD1	chr7	112445460	112482203
IFRD1_chr7_112445460_112482203	0/0	t0019	1901	1	0	0	1	0	0	copy fasta	IFRD1	chr7	112445460	112482203
IFRD1_chr7_112445460_112482203	0/0	t0020	1914	1	0	1	0	0	0	copy fasta	IFRD1	chr7	112445460	112482203
IFRD1_chr7_112445460_112482203	0/0	t0021	1914	1	0	0	1	0	0	copy fasta	IFRD1	chr7	112445460	112482203
IFRD1_chr7_112445460_112482203	0/0	t0022	1914	1	1	0	0	0	0	copy fasta	IFRD1	chr7	112445460	112482203
IFRD1_chr7_112445460_112482203	0/0	t0023	1914	1	0	1	0	0	0	copy fasta	IFRD1	chr7	112445460	112482203
IFRD2_chr3_50282732_50297429	0/1	t0001	615	280	85	56	108	10	20	copy fasta	IFRD2	chr3	50282732	50297429
IFRD2_chr3_50282732_50297429	1/0	t0002	615	75	1	11	45	6	11	copy fasta	IFRD2	chr3	50282732	50297429
IFRD2_chr3_50282732_50297429	0/0	t0003	614	3	3	0	0	0	0	copy fasta	IFRD2	chr3	50282732	50297429
IFRD2_chr3_50282732_50297429	0/0	t0004	615	2	0	0	0	0	2	copy fasta	IFRD2	chr3	50282732	50297429
IFRD2_chr3_50282732_50297429	0/0	t0005	614	2	0	1	1	0	0	copy fasta	IFRD2	chr3	50282732	50297429
IFRD2_chr3_50282732_50297429	0/0	t0006	615	1	0	0	0	0	1	copy fasta	IFRD2	chr3	50282732	50297429
IFRD2_chr3_50282732_50297429	0/0	t0007	615	1	1	0	0	0	0	copy fasta	IFRD2	chr3	50282732	50297429
IFT122_chr3_129435224_129525507	1/1	t0001	350	355	91	60	150	10	42	copy fasta	IFT122	chr3	129435224	129525507
IFT122_chr3_129435224_129525507	0/0	t0002	350	1	1	0	0	0	0	copy fasta	IFT122	chr3	129435224	129525507
IFT140_chr16_1505427_1617072	0/0	t0001	844	110	39	12	43	1	15	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	1/1	t0002	844	110	15	28	44	4	17	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	t0003	844	84	25	15	37	4	3	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	t0004	844	21	13	3	5	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	t0005	844	2	0	0	0	0	2	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	t0006	844	2	0	0	2	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	t0007	844	2	0	0	0	1	1	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	t0008	844	1	0	0	0	0	1	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	t0009	844	1	0	0	0	0	1	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	t0010	844	1	0	0	1	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT172_chr2_27439377_27494743	0/1	t0001	146	123	54	29	22	5	12	copy fasta	IFT172	chr2	27439377	27494743
IFT172_chr2_27439377_27494743	1/0	t0002	146	101	24	23	30	5	18	copy fasta	IFT172	chr2	27439377	27494743
IFT20_chr17_28323326_28340472	1/1	t0001	462	352	82	67	143	14	44	copy fasta	IFT20	chr17	28323326	28340472
IFT20_chr17_28323326_28340472	0/0	t0002	462	2	2	0	0	0	0	copy fasta	IFT20	chr17	28323326	28340472
IFT20_chr17_28323326_28340472	0/0	t0003	462	1	1	0	0	0	0	copy fasta	IFT20	chr17	28323326	28340472
IFT20_chr17_28323326_28340472	0/0	t0004	462	1	0	0	1	0	0	copy fasta	IFT20	chr17	28323326	28340472
IFT20_chr17_28323326_28340472	0/0	t0005	462	1	1	0	0	0	0	copy fasta	IFT20	chr17	28323326	28340472