JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IFT20_chr17_28323326_28340472	0/0	t0006	475	1	0	0	1	0	0	copy fasta	IFT20	chr17	28323326	28340472
IFT20_chr17_28323326_28340472	0/0	t0007	462	1	0	1	0	0	0	copy fasta	IFT20	chr17	28323326	28340472
IFT20_chr17_28323326_28340472	0/0	t0008	462	1	0	0	1	0	0	copy fasta	IFT20	chr17	28323326	28340472
IFT22_chr7_101305914_101326812	1/0	t0001	4324	76	7	19	30	4	15	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/1	t0002	4318	62	10	5	38	4	4	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0003	4322	28	5	3	20	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0004	4319	26	8	1	17	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0005	4325	16	1	4	6	2	3	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0006	4323	13	1	2	9	1	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0007	4324	12	1	10	1	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0008	4324	10	0	0	10	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0009	4331	10	5	3	0	0	2	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0010	4320	8	8	0	0	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0011	4324	8	0	0	8	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0012	4323	7	1	1	3	1	1	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0013	4323	7	0	0	6	0	1	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0014	4324	6	6	0	0	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0015	4324	6	0	4	2	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0016	4324	5	1	0	4	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0017	4323	5	1	1	3	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0018	4324	4	0	0	0	0	4	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0019	4328	4	1	2	0	0	1	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0020	4318	3	0	0	3	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0021	4325	3	0	0	3	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0022	4324	3	0	0	3	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0023	4325	3	0	1	2	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0024	4318	3	3	0	0	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0025	4325	3	0	3	0	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0026	4325	3	0	0	3	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0027	4309	3	0	0	3	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0028	4317	3	1	0	2	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0029	4317	3	2	0	1	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0030	4318	3	0	0	3	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0031	4330	3	3	0	0	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0032	4319	2	1	1	0	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0033	4321	2	2	0	0	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0034	4319	2	0	0	0	0	2	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0035	4318	2	0	0	0	0	2	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0036	4324	2	0	0	2	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0037	4325	2	2	0	0	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0038	4320	2	0	0	2	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0039	4318	2	1	0	0	1	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0040	4317	2	2	0	0	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0041	4323	2	2	0	0	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0042	4331	2	2	0	0	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0043	4330	2	2	0	0	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0044	4323	1	1	0	0	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0045	4318	1	1	0	0	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0046	4318	1	0	0	0	0	1	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0047	4321	1	1	0	0	0	0	copy fasta	IFT22	chr7	101305914	101326812