JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANKRD22_chr10_88814896_88856844	0/0	t0003	3304	27	0	5	21	0	1	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0004	3276	26	0	7	18	0	1	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0005	3303	23	0	6	17	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0006	3305	19	0	5	13	0	1	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0007	3292	17	15	2	0	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	1/0	t0008	3283	16	1	5	0	3	6	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0009	3274	14	12	2	0	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0010	3301	11	8	1	0	2	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0011	3293	11	6	5	0	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0012	3306	10	2	0	7	0	1	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0013	3303	8	0	0	8	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/1	t0014	3311	6	0	3	1	1	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0015	3306	6	0	3	3	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0016	3299	6	6	0	0	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0017	3283	6	6	0	0	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0018	3305	5	0	2	3	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0019	3304	5	0	0	4	0	1	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0020	3302	5	0	0	4	0	1	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0021	3299	5	5	0	0	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0022	3276	5	0	0	5	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0023	3309	4	0	0	3	0	1	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0024	3307	4	1	0	0	0	3	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0025	3304	4	0	4	0	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0026	3300	4	3	1	0	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0027	3291	4	2	1	0	0	1	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0028	3289	4	1	1	1	1	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0029	3276	4	0	0	4	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0030	3310	3	0	0	3	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0031	3310	3	0	1	0	1	1	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0032	3309	3	0	1	0	2	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0033	3294	3	3	0	0	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0034	3290	3	0	1	0	0	2	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0035	3309	2	0	0	2	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0036	3290	2	0	0	2	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0037	3289	2	0	0	2	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0038	3314	2	0	2	0	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0039	3312	2	0	0	2	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0040	3311	2	0	0	2	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0041	3311	2	0	0	2	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0042	3308	2	0	0	1	0	1	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0043	3307	2	1	0	1	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0044	3305	2	0	0	2	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0045	3305	2	2	0	0	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0046	3304	2	0	0	2	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0047	3301	2	2	0	0	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0048	3300	2	2	0	0	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0049	3283	2	1	0	1	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0050	3312	1	0	0	0	0	1	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0051	3311	1	1	0	0	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0052	3305	1	0	0	1	0	0	copy fasta	ANKRD22	chr10	88814896	88856844