JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IFT22_chr7_101305914_101326812	0/0	t0048	4319	1	0	0	1	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0049	4324	1	0	0	1	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0050	4325	1	0	1	0	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0051	4324	1	0	0	0	0	1	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0052	4325	1	0	0	1	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0053	4325	1	0	1	0	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0054	4324	1	0	0	0	1	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0055	4324	1	0	0	0	0	1	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0056	4324	1	1	0	0	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0057	4324	1	0	0	0	1	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0058	4324	1	0	0	1	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0059	4324	1	1	0	0	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0060	4324	1	0	0	0	1	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0061	4327	1	0	0	1	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0062	4322	1	1	0	0	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0063	4325	1	0	1	0	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0064	4323	1	1	0	0	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0065	4323	1	0	0	1	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0066	4324	1	0	0	1	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0067	4326	1	0	0	1	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0068	4319	1	0	1	0	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0069	4318	1	0	0	1	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0070	4318	1	0	0	1	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0071	4319	1	1	0	0	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0072	4324	1	1	0	0	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0073	4323	1	1	0	0	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0074	4329	1	1	0	0	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0075	4331	1	0	0	0	0	1	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0076	4332	1	1	0	0	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0077	4331	1	1	0	0	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0078	4325	1	1	0	0	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0079	4325	1	1	0	0	0	0	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	t0080	4322	1	0	0	0	0	1	copy fasta	IFT22	chr7	101305914	101326812
IFT25_chr1_53916561_53950699	1/1	t0001	251	276	89	37	110	12	26	copy fasta	IFT25	chr1	53916561	53950699
IFT25_chr1_53916561_53950699	0/0	t0002	251	5	4	1	0	0	0	copy fasta	IFT25	chr1	53916561	53950699
IFT25_chr1_53916561_53950699	0/0	t0003	251	1	1	0	0	0	0	copy fasta	IFT25	chr1	53916561	53950699
IFT27_chr22_36753211_36781119	1/1	t0001	513	257	58	67	85	12	33	copy fasta	IFT27	chr22	36753211	36781119
IFT27_chr22_36753211_36781119	0/0	t0002	513	30	28	2	0	0	0	copy fasta	IFT27	chr22	36753211	36781119
IFT27_chr22_36753211_36781119	0/0	t0003	513	3	0	0	3	0	0	copy fasta	IFT27	chr22	36753211	36781119
IFT27_chr22_36753211_36781119	0/0	t0004	513	2	2	0	0	0	0	copy fasta	IFT27	chr22	36753211	36781119
IFT27_chr22_36753211_36781119	0/0	t0005	513	2	0	0	2	0	0	copy fasta	IFT27	chr22	36753211	36781119
IFT27_chr22_36753211_36781119	0/0	t0006	513	2	2	0	0	0	0	copy fasta	IFT27	chr22	36753211	36781119
IFT27_chr22_36753211_36781119	0/0	t0007	513	1	0	0	0	0	1	copy fasta	IFT27	chr22	36753211	36781119
IFT27_chr22_36753211_36781119	0/0	t0008	513	1	0	1	0	0	0	copy fasta	IFT27	chr22	36753211	36781119
IFT43_chr14_75980763_76088742	1/1	t0001	190	396	92	76	172	12	42	copy fasta	IFT43	chr14	75980763	76088742
IFT46_chr11_118539543_118570931	1/1	t0001	648	267	72	58	101	9	25	copy fasta	IFT46	chr11	118539543	118570931
IFT46_chr11_118539543_118570931	0/0	t0002	648	95	1	3	73	1	17	copy fasta	IFT46	chr11	118539543	118570931
IFT46_chr11_118539543_118570931	0/0	t0003	648	8	8	0	0	0	0	copy fasta	IFT46	chr11	118539543	118570931
IFT46_chr11_118539543_118570931	0/0	t0004	648	4	0	4	0	0	0	copy fasta	IFT46	chr11	118539543	118570931
IFT46_chr11_118539543_118570931	0/0	t0005	648	3	3	0	0	0	0	copy fasta	IFT46	chr11	118539543	118570931