JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IFT46_chr11_118539543_118570931	0/0	t0006	648	2	2	0	0	0	0	copy fasta	IFT46	chr11	118539543	118570931
IFT46_chr11_118539543_118570931	0/0	t0007	648	1	0	1	0	0	0	copy fasta	IFT46	chr11	118539543	118570931
IFT52_chr20_43585937_43652299	1/1	t0001	441	298	79	64	107	10	36	copy fasta	IFT52	chr20	43585937	43652299
IFT52_chr20_43585937_43652299	0/0	t0002	441	1	0	0	1	0	0	copy fasta	IFT52	chr20	43585937	43652299
IFT52_chr20_43585937_43652299	0/0	t0003	441	1	1	0	0	0	0	copy fasta	IFT52	chr20	43585937	43652299
IFT56_chr7_139128778_139196986	0/0	t0001	2632	107	37	12	44	1	13	copy fasta	IFT56	chr7	139128778	139196986
IFT56_chr7_139128778_139196986	0/1	t0002	2635	85	11	14	40	4	15	copy fasta	IFT56	chr7	139128778	139196986
IFT56_chr7_139128778_139196986	0/0	t0003	2632	65	7	2	48	1	7	copy fasta	IFT56	chr7	139128778	139196986
IFT56_chr7_139128778_139196986	0/0	t0004	2635	22	0	1	21	0	0	copy fasta	IFT56	chr7	139128778	139196986
IFT56_chr7_139128778_139196986	0/0	t0005	2635	14	13	1	0	0	0	copy fasta	IFT56	chr7	139128778	139196986
IFT56_chr7_139128778_139196986	0/0	t0006	2632	6	0	4	0	1	1	copy fasta	IFT56	chr7	139128778	139196986
IFT56_chr7_139128778_139196986	0/0	t0007	2629	6	6	0	0	0	0	copy fasta	IFT56	chr7	139128778	139196986
IFT56_chr7_139128778_139196986	1/0	t0008	2635	6	1	3	0	1	0	copy fasta	IFT56	chr7	139128778	139196986
IFT56_chr7_139128778_139196986	0/0	t0009	2635	3	0	2	0	0	1	copy fasta	IFT56	chr7	139128778	139196986
IFT56_chr7_139128778_139196986	0/0	t0010	2632	2	2	0	0	0	0	copy fasta	IFT56	chr7	139128778	139196986
IFT56_chr7_139128778_139196986	0/0	t0011	2632	2	2	0	0	0	0	copy fasta	IFT56	chr7	139128778	139196986
IFT56_chr7_139128778_139196986	0/0	t0012	2635	2	2	0	0	0	0	copy fasta	IFT56	chr7	139128778	139196986
IFT56_chr7_139128778_139196986	0/0	t0013	2635	2	2	0	0	0	0	copy fasta	IFT56	chr7	139128778	139196986
IFT56_chr7_139128778_139196986	0/0	t0014	2632	1	1	0	0	0	0	copy fasta	IFT56	chr7	139128778	139196986
IFT56_chr7_139128778_139196986	0/0	t0015	2629	1	1	0	0	0	0	copy fasta	IFT56	chr7	139128778	139196986
IFT56_chr7_139128778_139196986	0/0	t0016	2635	1	0	1	0	0	0	copy fasta	IFT56	chr7	139128778	139196986
IFT56_chr7_139128778_139196986	0/0	t0017	2635	1	0	0	0	0	1	copy fasta	IFT56	chr7	139128778	139196986
IFT56_chr7_139128778_139196986	0/0	t0018	2635	1	0	0	1	0	0	copy fasta	IFT56	chr7	139128778	139196986
IFT56_chr7_139128778_139196986	0/0	t0019	2635	1	1	0	0	0	0	copy fasta	IFT56	chr7	139128778	139196986
IFT56_chr7_139128778_139196986	0/0	t0020	2632	1	1	0	0	0	0	copy fasta	IFT56	chr7	139128778	139196986
IFT56_chr7_139128778_139196986	0/0	t0021	2632	1	1	0	0	0	0	copy fasta	IFT56	chr7	139128778	139196986
IFT57_chr3_108155812_108227424	0/0	t0001	1766	97	32	29	19	6	11	copy fasta	IFT57	chr3	108155812	108227424
IFT57_chr3_108155812_108227424	0/0	t0002	1768	90	11	10	62	0	7	copy fasta	IFT57	chr3	108155812	108227424
IFT57_chr3_108155812_108227424	0/0	t0003	1767	84	17	4	55	1	7	copy fasta	IFT57	chr3	108155812	108227424
IFT57_chr3_108155812_108227424	0/0	t0004	1773	31	2	9	19	0	1	copy fasta	IFT57	chr3	108155812	108227424
IFT57_chr3_108155812_108227424	0/1	t0005	1767	26	3	10	1	1	10	copy fasta	IFT57	chr3	108155812	108227424
IFT57_chr3_108155812_108227424	1/0	t0006	1768	10	9	0	0	0	0	copy fasta	IFT57	chr3	108155812	108227424
IFT57_chr3_108155812_108227424	0/0	t0007	1773	4	4	0	0	0	0	copy fasta	IFT57	chr3	108155812	108227424
IFT57_chr3_108155812_108227424	0/0	t0008	1766	2	0	2	0	0	0	copy fasta	IFT57	chr3	108155812	108227424
IFT57_chr3_108155812_108227424	0/0	t0009	1766	2	0	0	0	0	2	copy fasta	IFT57	chr3	108155812	108227424
IFT57_chr3_108155812_108227424	0/0	t0010	1773	2	2	0	0	0	0	copy fasta	IFT57	chr3	108155812	108227424
IFT57_chr3_108155812_108227424	0/0	t0011	1766	1	0	0	1	0	0	copy fasta	IFT57	chr3	108155812	108227424
IFT57_chr3_108155812_108227424	0/0	t0012	1768	1	0	0	1	0	0	copy fasta	IFT57	chr3	108155812	108227424
IFT57_chr3_108155812_108227424	0/0	t0013	1767	1	1	0	0	0	0	copy fasta	IFT57	chr3	108155812	108227424
IFT57_chr3_108155812_108227424	0/0	t0014	1767	1	0	1	0	0	0	copy fasta	IFT57	chr3	108155812	108227424
IFT57_chr3_108155812_108227424	0/0	t0015	1773	1	1	0	0	0	0	copy fasta	IFT57	chr3	108155812	108227424
IFT57_chr3_108155812_108227424	0/0	t0016	1772	1	0	1	0	0	0	copy fasta	IFT57	chr3	108155812	108227424
IFT70A_chr2_177607999_177623742	0/1	t0001	3747	175	13	41	89	10	21	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	t0002	3747	60	1	3	49	2	5	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	1/0	t0003	3747	30	18	6	1	0	4	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	t0004	3747	28	13	1	12	0	2	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	t0005	3747	15	15	0	0	0	0	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	t0006	3745	10	5	0	0	0	5	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	t0007	3747	8	7	1	0	0	0	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	t0008	3747	6	0	0	6	0	0	copy fasta	IFT70A	chr2	177607999	177623742