JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IFT70A_chr2_177607999_177623742	0/0	t0009	3746	5	4	1	0	0	0	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	t0010	3747	4	4	0	0	0	0	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	t0011	3747	3	0	0	3	0	0	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	t0012	3749	3	3	0	0	0	0	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	t0013	3731	3	3	0	0	0	0	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	t0014	3747	3	0	0	3	0	0	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	t0015	3747	2	1	0	0	0	1	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	t0016	3747	2	2	0	0	0	0	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	t0017	3747	2	1	1	0	0	0	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	t0018	3747	2	0	0	2	0	0	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	t0019	3747	2	0	0	2	0	0	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	t0020	3747	2	0	0	2	0	0	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	t0021	3747	2	2	0	0	0	0	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	t0022	3740	2	0	1	1	0	0	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	t0023	3740	2	0	0	2	0	0	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	t0024	3745	2	0	2	0	0	0	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	t0025	3747	1	1	0	0	0	0	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	t0026	3747	1	0	1	0	0	0	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	t0027	3747	1	1	0	0	0	0	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	t0028	3747	1	0	1	0	0	0	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	t0029	3747	1	1	0	0	0	0	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	t0030	3733	1	0	0	1	0	0	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	t0031	3747	1	0	0	1	0	0	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	t0032	3747	1	0	0	0	0	1	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	t0033	3747	1	0	0	0	0	1	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	t0034	3747	1	0	1	0	0	0	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	t0035	3747	1	1	0	0	0	0	copy fasta	IFT70A	chr2	177607999	177623742
IFT70B_chr2_177543998_177557796	0/0	t0001	1802	284	59	45	149	8	23	copy fasta	IFT70B	chr2	177543998	177557796
IFT70B_chr2_177543998_177557796	1/0	t0002	1802	31	18	8	0	0	4	copy fasta	IFT70B	chr2	177543998	177557796
IFT70B_chr2_177543998_177557796	0/0	t0003	1802	25	0	8	17	0	0	copy fasta	IFT70B	chr2	177543998	177557796
IFT70B_chr2_177543998_177557796	0/1	t0004	1802	15	9	0	0	0	5	copy fasta	IFT70B	chr2	177543998	177557796
IFT70B_chr2_177543998_177557796	0/0	t0005	1804	10	0	0	10	0	0	copy fasta	IFT70B	chr2	177543998	177557796
IFT70B_chr2_177543998_177557796	0/0	t0006	1802	4	0	0	4	0	0	copy fasta	IFT70B	chr2	177543998	177557796
IFT70B_chr2_177543998_177557796	0/0	t0007	1801	4	4	0	0	0	0	copy fasta	IFT70B	chr2	177543998	177557796
IFT70B_chr2_177543998_177557796	0/0	t0008	1802	2	0	0	2	0	0	copy fasta	IFT70B	chr2	177543998	177557796
IFT70B_chr2_177543998_177557796	0/0	t0009	1802	2	2	0	0	0	0	copy fasta	IFT70B	chr2	177543998	177557796
IFT70B_chr2_177543998_177557796	0/0	t0010	1802	1	1	0	0	0	0	copy fasta	IFT70B	chr2	177543998	177557796
IFT70B_chr2_177543998_177557796	0/0	t0011	1802	1	1	0	0	0	0	copy fasta	IFT70B	chr2	177543998	177557796
IFT70B_chr2_177543998_177557796	0/0	t0012	1802	1	0	1	0	0	0	copy fasta	IFT70B	chr2	177543998	177557796
IFT70B_chr2_177543998_177557796	0/0	t0013	1802	1	0	0	0	0	1	copy fasta	IFT70B	chr2	177543998	177557796
IFT70B_chr2_177543998_177557796	0/0	t0014	1802	1	0	0	0	0	1	copy fasta	IFT70B	chr2	177543998	177557796
IFT74_chr9_26951412_27071134	1/1	t0001	3523	158	45	23	54	8	26	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	t0002	3523	87	9	18	55	0	5	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	t0003	3523	24	2	16	0	3	3	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	t0004	3511	13	0	3	5	1	4	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	t0005	3511	12	0	2	3	0	7	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	t0006	3523	5	4	1	0	0	0	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	t0007	3523	5	4	1	0	0	0	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	t0008	3523	3	3	0	0	0	0	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	t0009	3523	2	2	0	0	0	0	copy fasta	IFT74	chr9	26951412	27071134