JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IFT74_chr9_26951412_27071134	0/0	t0010	3523	2	2	0	0	0	0	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	t0011	3523	2	2	0	0	0	0	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	t0012	3511	2	2	0	0	0	0	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	t0013	3523	2	0	0	2	0	0	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	t0014	3523	2	2	0	0	0	0	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	t0015	3523	2	2	0	0	0	0	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	t0016	3523	1	0	1	0	0	0	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	t0017	3523	1	1	0	0	0	0	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	t0018	3523	1	1	0	0	0	0	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	t0019	3523	1	0	1	0	0	0	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	t0020	3523	1	0	0	1	0	0	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	t0021	3523	1	0	0	1	0	0	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	t0022	3523	1	0	0	0	0	1	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	t0023	3523	1	1	0	0	0	0	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	t0024	3523	1	0	1	0	0	0	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	t0025	3523	1	1	0	0	0	0	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	t0026	3523	1	1	0	0	0	0	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	t0027	3523	1	0	0	1	0	0	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	t0028	3523	1	1	0	0	0	0	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	t0029	3523	1	0	0	1	0	0	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	t0030	3523	1	1	0	0	0	0	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	t0031	3523	1	1	0	0	0	0	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	t0032	3523	1	0	0	1	0	0	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	t0033	3523	1	1	0	0	0	0	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	t0034	3523	1	1	0	0	0	0	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	t0035	3523	1	1	0	0	0	0	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	t0036	3511	1	0	1	0	0	0	copy fasta	IFT74	chr9	26951412	27071134
IFT80_chr3_160251986_160404225	1/1	t0001	1666	145	40	32	35	12	24	copy fasta	IFT80	chr3	160251986	160404225
IFT80_chr3_160251986_160404225	0/0	t0002	1666	45	36	8	0	0	1	copy fasta	IFT80	chr3	160251986	160404225
IFT80_chr3_160251986_160404225	0/0	t0003	1666	9	9	0	0	0	0	copy fasta	IFT80	chr3	160251986	160404225
IFT80_chr3_160251986_160404225	0/0	t0004	1666	5	0	0	5	0	0	copy fasta	IFT80	chr3	160251986	160404225
IFT80_chr3_160251986_160404225	0/0	t0005	1666	2	2	0	0	0	0	copy fasta	IFT80	chr3	160251986	160404225
IFT80_chr3_160251986_160404225	0/0	t0006	1666	2	0	0	2	0	0	copy fasta	IFT80	chr3	160251986	160404225
IFT80_chr3_160251986_160404225	0/0	t0007	1666	1	1	0	0	0	0	copy fasta	IFT80	chr3	160251986	160404225
IFT80_chr3_160251986_160404225	0/0	t0008	1666	1	1	0	0	0	0	copy fasta	IFT80	chr3	160251986	160404225
IFT80_chr3_160251986_160404225	0/0	t0009	1666	1	1	0	0	0	0	copy fasta	IFT80	chr3	160251986	160404225
IFT80_chr3_160251986_160404225	0/0	t0010	1666	1	0	0	0	0	1	copy fasta	IFT80	chr3	160251986	160404225
IFT81_chr12_110119357_110223793	1/0	t0001	1094	174	74	31	44	7	17	copy fasta	IFT81	chr12	110119357	110223793
IFT81_chr12_110119357_110223793	0/1	t0002	1094	34	9	16	0	4	4	copy fasta	IFT81	chr12	110119357	110223793
IFT81_chr12_110119357_110223793	0/0	t0003	1094	5	0	4	0	1	0	copy fasta	IFT81	chr12	110119357	110223793
IFT81_chr12_110119357_110223793	0/0	t0004	1094	3	0	0	0	0	3	copy fasta	IFT81	chr12	110119357	110223793
IFT81_chr12_110119357_110223793	0/0	t0005	1094	1	1	0	0	0	0	copy fasta	IFT81	chr12	110119357	110223793
IFT81_chr12_110119357_110223793	0/0	t0006	1094	1	0	1	0	0	0	copy fasta	IFT81	chr12	110119357	110223793
IFT88_chr13_20562157_20696444	1/1	t0001	376	305	87	50	115	15	36	copy fasta	IFT88	chr13	20562157	20696444
IFT88_chr13_20562157_20696444	0/0	t0002	376	1	0	0	0	1	0	copy fasta	IFT88	chr13	20562157	20696444
IFT88_chr13_20562157_20696444	0/0	t0003	376	1	1	0	0	0	0	copy fasta	IFT88	chr13	20562157	20696444
IFT88_chr13_20562157_20696444	0/0	t0004	376	1	0	0	1	0	0	copy fasta	IFT88	chr13	20562157	20696444
IFTAP_chr11_36589502_36664272	1/1	t0001	201	297	62	58	138	8	29	copy fasta	IFTAP	chr11	36589502	36664272
IFTAP_chr11_36589502_36664272	0/0	t0002	201	53	26	10	12	3	2	copy fasta	IFTAP	chr11	36589502	36664272
IFTAP_chr11_36589502_36664272	0/0	t0003	201	6	6	0	0	0	0	copy fasta	IFTAP	chr11	36589502	36664272