JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IFTAP_chr11_36589502_36664272	0/0	t0004	201	2	0	0	0	1	1	copy fasta	IFTAP	chr11	36589502	36664272
IGBP1C_chr17_58655424_58697045	1/1	t0001	491	304	93	56	109	11	33	copy fasta	IGBP1C	chr17	58655424	58697045
IGBP1C_chr17_58655424_58697045	0/0	t0002	491	60	1	12	35	5	7	copy fasta	IGBP1C	chr17	58655424	58697045
IGBP1C_chr17_58655424_58697045	0/0	t0003	491	3	1	2	0	0	0	copy fasta	IGBP1C	chr17	58655424	58697045
IGBP1C_chr17_58655424_58697045	0/0	t0004	491	1	1	0	0	0	0	copy fasta	IGBP1C	chr17	58655424	58697045
IGBP1_chrX_70128447_70171324	1/1	t0001	663	239	73	45	82	11	26	copy fasta	IGBP1	chrX	70128447	70171324
IGBP1_chrX_70128447_70171324	0/0	t0002	663	5	5	0	0	0	0	copy fasta	IGBP1	chrX	70128447	70171324
IGBP1_chrX_70128447_70171324	0/0	t0003	663	1	1	0	0	0	0	copy fasta	IGBP1	chrX	70128447	70171324
IGDCC3_chr15_65322127_65383002	0/1	t0001	1998	127	20	25	55	6	20	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	t0002	2000	41	6	13	17	2	3	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	1/0	t0003	1997	22	14	4	0	2	1	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	t0004	1997	18	2	1	13	0	2	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	t0005	1998	11	11	0	0	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	t0006	1999	10	1	1	6	0	2	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	t0007	1999	8	1	4	3	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	t0008	1998	7	3	4	0	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	t0009	1997	6	0	3	2	1	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	t0010	1997	5	2	0	2	0	1	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	t0011	1996	5	5	0	0	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	t0012	2001	5	0	4	1	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	t0013	1999	4	1	3	0	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	t0014	1983	3	3	0	0	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	t0015	1995	3	3	0	0	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	t0016	1995	2	2	0	0	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	t0017	1996	2	1	0	0	1	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	t0018	1999	2	0	1	1	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	t0019	2000	2	0	1	1	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	t0020	1998	2	0	0	0	0	2	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	t0021	1998	2	0	1	0	1	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	t0022	1997	2	0	0	0	0	2	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	t0023	1997	1	1	0	0	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	t0024	1997	1	0	0	1	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	t0025	1997	1	1	0	0	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	t0026	1996	1	1	0	0	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	t0027	1997	1	0	1	0	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	t0028	2001	1	0	0	1	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	t0029	2000	1	0	1	0	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	t0030	2000	1	0	0	1	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	t0031	1999	1	0	0	0	1	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	t0032	1997	1	1	0	0	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	t0033	1996	1	1	0	0	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	t0034	2000	1	0	0	1	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	t0035	1999	1	0	1	0	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	t0036	1997	1	1	0	0	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	t0037	1997	1	1	0	0	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	t0038	1997	1	0	1	0	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	t0039	2000	1	0	0	1	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	t0040	1998	1	0	0	0	0	1	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	t0041	2000	1	0	0	1	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	t0042	1998	1	0	0	1	0	0	copy fasta	IGDCC3	chr15	65322127	65383002