JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IGDCC3_chr15_65322127_65383002	0/0	t0043	1996	1	0	0	1	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	t0044	1998	1	0	0	1	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	t0045	1998	1	1	0	0	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	t0046	1997	1	0	1	0	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	t0047	1998	1	1	0	0	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC4_chr15_65376484_65427947	0/1	t0001	2610	207	48	36	87	5	30	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	1/0	t0002	2611	38	2	3	29	0	3	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	t0003	2609	23	9	4	7	0	3	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	t0004	2598	8	3	5	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	t0005	2610	8	1	0	7	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	t0006	2611	7	0	0	7	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	t0007	2611	6	6	0	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	t0008	2611	5	2	3	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	t0009	2611	4	4	0	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	t0010	2611	3	3	0	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	t0011	2576	3	0	0	3	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	t0012	2611	3	0	0	2	0	1	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	t0013	2611	3	2	0	1	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	t0014	2610	3	3	0	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	t0015	2610	2	0	0	2	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	t0016	2611	2	1	1	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	t0017	2611	2	2	0	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	t0018	2610	2	0	0	2	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	t0019	2611	2	2	0	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	t0020	2611	2	0	0	0	2	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	t0021	2610	1	0	0	1	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	t0022	2610	1	0	1	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	t0023	2611	1	1	0	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	t0024	2597	1	1	0	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	t0025	2610	1	0	1	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	t0026	2610	1	1	0	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	t0027	2610	1	0	0	1	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	t0028	2610	1	1	0	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	t0029	2611	1	1	0	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	t0030	2610	1	0	0	1	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	t0031	2610	1	0	1	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	t0032	2609	1	0	0	1	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	t0033	2611	1	1	0	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	t0034	2612	1	1	0	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	t0035	2610	1	0	0	0	1	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	t0036	2611	1	1	0	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	t0037	2610	1	0	0	0	0	1	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	t0038	2610	1	0	1	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	t0039	2611	1	0	0	1	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGF1R_chr15_98643539_98969530	0/0	t0001	8129	13	0	5	6	0	2	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0002	8120	8	0	2	2	0	4	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0003	8123	6	0	0	2	0	4	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0004	8122	4	0	0	3	0	1	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0005	8126	4	0	1	3	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0006	8121	3	0	3	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530