JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IGF1R_chr15_98643539_98969530	0/0	t0007	8121	3	1	1	0	1	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/1	t0008	8124	3	1	0	0	1	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0009	8121	2	2	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0010	8127	2	2	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0011	8125	2	0	0	2	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0012	8131	2	2	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0013	8127	2	2	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0014	8124	2	2	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0015	8122	2	0	1	0	1	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0016	8127	2	2	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0017	8120	2	0	0	1	0	1	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0018	8123	2	0	0	1	0	1	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0019	8122	2	2	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0020	8124	2	2	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0021	8128	2	0	1	1	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0022	8130	2	0	1	0	0	1	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0023	8129	2	1	1	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0024	8130	2	0	0	2	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0025	8122	2	1	1	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0026	8127	2	2	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0027	8124	1	0	1	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0028	8123	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0029	8124	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0030	8123	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0031	8129	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0032	8116	1	0	0	0	0	1	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0033	8123	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0034	8124	1	0	1	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0035	8123	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0036	8119	1	0	0	1	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0037	8123	1	0	1	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0038	8122	1	0	0	1	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0039	8120	1	0	0	1	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0040	8121	1	0	0	0	0	1	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0041	8121	1	0	0	1	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0042	8126	1	0	0	1	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0043	8126	1	0	0	1	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0044	8126	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0045	8125	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0046	8123	1	0	1	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0047	8123	1	0	0	1	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0048	8124	1	0	0	1	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0049	8123	1	0	0	0	1	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0050	8123	1	0	1	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0051	8123	1	0	1	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0052	8123	1	0	0	1	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0053	8123	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0054	8125	1	0	1	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0055	8125	1	0	0	0	0	1	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0056	8124	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530