JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IGF1R_chr15_98643539_98969530	0/0	t0057	8121	1	0	0	1	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0058	8122	1	0	0	1	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0059	8122	1	0	0	0	1	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0060	8123	1	0	1	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0061	8124	1	0	1	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0062	8132	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0063	8130	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0064	8139	1	0	1	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0065	8131	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0066	8119	1	0	0	0	0	1	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0067	8124	1	0	1	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0068	8121	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0069	8121	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0070	8125	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0071	8125	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0072	8126	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0073	8128	1	0	0	0	0	1	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0074	8123	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0075	8125	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0076	8125	1	0	1	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0077	8123	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0078	8125	1	0	0	0	1	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0079	8124	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0080	8125	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0081	8124	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0082	8124	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0083	8123	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0084	8121	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0085	8124	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0086	8124	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0087	8123	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0088	8129	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0089	8125	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0090	8132	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0091	8130	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0092	8113	1	0	0	1	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0093	8122	1	0	0	1	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0094	8123	1	0	0	1	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0095	8123	1	0	0	0	0	1	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0096	8123	1	0	0	1	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0097	8124	1	0	0	0	0	1	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0098	8125	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0099	8120	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0100	8121	1	0	0	1	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0101	8122	1	0	1	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0102	8123	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0103	8122	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0104	8129	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0105	8124	1	0	0	0	0	1	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0106	8127	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530