JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
IGF1R_chr15_98643539_98969530	0/0	t0107	8123	1	1	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0108	8124	1	0	0	1	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0109	8130	1	1	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0110	8125	1	0	1	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0111	8128	1	0	0	1	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0112	8126	1	0	0	1	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0113	8127	1	0	0	1	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0114	8126	1	0	1	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0115	8133	1	0	0	1	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0116	8125	1	0	0	1	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0117	8131	1	0	1	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	1/0	t0118	8132	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0119	8128	1	1	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0120	8131	1	1	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0121	8130	1	1	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0122	8129	1	0	1	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0123	8125	1	0	1	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0124	8133	1	0	0	1	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0125	8128	1	0	0	0	1	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0126	8129	1	0	1	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0127	8128	1	0	0	1	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0128	8129	1	0	0	1	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0129	8130	1	0	0	1	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0130	8129	1	0	0	1	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0131	8130	1	0	0	1	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0132	8131	1	0	1	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0133	8131	1	0	0	1	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0134	8130	1	0	0	1	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0135	8127	1	0	1	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0136	8129	1	0	1	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0137	8129	1	1	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0138	8129	1	0	1	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0139	8130	1	1	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0140	8127	1	1	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0141	8130	1	0	0	1	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0142	8126	1	0	0	0	1	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0143	8130	1	0	1	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0144	8128	1	0	1	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0145	8115	1	1	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0146	8117	1	1	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0147	8124	1	1	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0148	8123	1	1	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0149	8123	1	1	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0150	8127	1	1	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0151	8127	1	1	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0152	8124	1	1	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0153	8125	1	1	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0154	8125	1	1	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0155	8127	1	0	1	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	t0156	8129	1	0	1	0	0	copy fasta	IGF1R	chr15	98643539	98969530