Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANKRD22_chr10_88814896_88856844	0/0	t0053	3291	1	0	0	1	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0054	3283	1	1	0	0	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0055	3283	1	0	0	0	0	1	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0056	3303	1	0	0	0	0	1	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0057	3315	1	0	0	1	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0058	3313	1	0	1	0	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0059	3311	1	0	0	1	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0060	3310	1	0	0	1	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0061	3309	1	0	0	1	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0062	3308	1	1	0	0	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0063	3308	1	0	1	0	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0064	3307	1	0	0	1	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0065	3307	1	0	1	0	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0066	3308	1	0	1	0	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0067	3305	1	0	0	1	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0068	3305	1	1	0	0	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0069	3304	1	0	0	1	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0070	3304	1	0	0	1	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0071	3303	1	1	0	0	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0072	3303	1	0	0	0	1	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0073	3303	1	0	0	1	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0074	3302	1	1	0	0	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0075	3302	1	0	0	1	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0076	3302	1	0	0	0	1	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0077	3301	1	0	0	0	1	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0078	3298	1	1	0	0	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0079	3298	1	1	0	0	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0080	3297	1	1	0	0	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0081	3293	1	1	0	0	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0082	3292	1	0	0	0	0	1	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0083	3292	1	1	0	0	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0084	3291	1	0	1	0	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0085	3291	1	0	0	0	0	1	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0086	3290	1	0	0	0	0	1	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0087	3289	1	1	0	0	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0088	3283	1	1	0	0	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0089	3283	1	0	0	0	0	1	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0090	3283	1	0	0	1	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0091	3276	1	0	0	1	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0092	3276	1	0	0	1	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0093	3274	1	1	0	0	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	t0094	3304	1	0	0	0	0	1	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD23_chr2_96832912_96849021	1/1	t0001	1667	230	26	52	107	14	29	copy fasta	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	t0002	1667	49	27	10	10	0	2	copy fasta	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	t0003	1668	27	10	0	15	0	2	copy fasta	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	t0004	1667	15	15	0	0	0	0	copy fasta	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	t0005	1667	7	6	1	0	0	0	copy fasta	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	t0006	1667	6	0	0	6	0	0	copy fasta	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	t0007	1667	4	4	0	0	0	0	copy fasta	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	t0008	1667	3	0	0	3	0	0	copy fasta	ANKRD23	chr2	96832912	96849021