JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IGF1_chr12_102390874_102485563	0/0	t0051	6818	1	0	0	0	0	1	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	t0052	6818	1	0	1	0	0	0	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	t0053	6825	1	0	0	0	0	1	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	t0054	6821	1	1	0	0	0	0	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	t0055	6814	1	1	0	0	0	0	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	t0056	6824	1	0	1	0	0	0	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	t0057	6819	1	1	0	0	0	0	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	t0058	6821	1	0	0	1	0	0	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	t0059	6818	1	1	0	0	0	0	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	t0060	6816	1	0	0	0	0	1	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	t0061	6815	1	0	1	0	0	0	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	t0062	6814	1	1	0	0	0	0	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	t0063	6815	1	1	0	0	0	0	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	t0064	6818	1	1	0	0	0	0	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	t0065	6814	1	0	0	1	0	0	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	t0066	6823	1	0	0	1	0	0	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	t0067	6819	1	1	0	0	0	0	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	t0068	6819	1	1	0	0	0	0	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	t0069	6816	1	0	0	1	0	0	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	t0070	6826	1	1	0	0	0	0	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	t0071	6819	1	0	0	0	0	1	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	t0072	6820	1	0	0	1	0	0	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	t0073	6818	1	0	0	1	0	0	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	t0074	6818	1	0	1	0	0	0	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	t0075	6818	1	0	1	0	0	0	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	t0076	6814	1	0	1	0	0	0	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	t0077	6834	1	1	0	0	0	0	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	t0078	6831	1	1	0	0	0	0	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	t0079	6832	1	1	0	0	0	0	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	t0080	6819	1	1	0	0	0	0	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	t0081	6817	1	0	0	0	1	0	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	t0082	6819	1	1	0	0	0	0	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	t0083	6818	1	0	0	1	0	0	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	t0084	6817	1	0	0	1	0	0	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	t0085	6818	1	0	0	1	0	0	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	t0086	6822	1	1	0	0	0	0	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	t0087	6816	1	0	0	1	0	0	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	t0088	6814	1	1	0	0	0	0	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	t0089	6819	1	1	0	0	0	0	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	t0090	6813	1	1	0	0	0	0	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	t0091	6818	1	0	1	0	0	0	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	t0092	6813	1	0	0	0	1	0	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	t0093	6828	1	1	0	0	0	0	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	t0094	6820	1	1	0	0	0	0	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	t0095	6818	1	1	0	0	0	0	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	t0096	6814	1	1	0	0	0	0	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	t0097	6818	1	0	0	1	0	0	copy fasta	IGF1	chr12	102390874	102485563
IGF2BP1_chr17_48992385_49061145	1/0	t0001	7063	67	2	8	47	1	8	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0002	7065	48	25	14	2	1	6	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0003	7063	22	1	4	7	4	6	copy fasta	IGF2BP1	chr17	48992385	49061145