JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IGF2BP1_chr17_48992385_49061145	0/0	t0004	7065	21	1	5	15	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0005	7056	12	2	3	3	1	3	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0006	7065	11	2	1	6	0	2	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0007	7062	11	4	5	0	1	1	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0008	7065	10	10	0	0	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0009	7066	10	0	4	1	0	5	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0010	7066	9	4	2	3	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0011	7063	7	0	7	0	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0012	7064	5	0	0	5	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0013	7065	4	3	1	0	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0014	7064	3	3	0	0	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0015	7064	3	2	1	0	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0016	7066	3	3	0	0	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0017	7056	2	2	0	0	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0018	7065	2	0	0	2	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0019	7066	2	1	0	1	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0020	7065	2	0	2	0	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0021	7064	2	1	1	0	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0022	7064	2	0	2	0	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0023	7064	2	0	2	0	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0024	7066	2	0	0	2	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0025	7066	2	1	0	0	0	1	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0026	7063	2	1	0	1	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0027	7064	2	2	0	0	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0028	7055	2	1	0	1	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0029	7063	2	0	2	0	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0030	7062	2	0	1	0	1	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0031	7064	2	2	0	0	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0032	7065	2	2	0	0	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0033	7064	1	1	0	0	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0034	7062	1	0	1	0	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0035	7065	1	0	1	0	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0036	7064	1	0	0	1	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0037	7065	1	0	1	0	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0038	7065	1	0	1	0	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0039	7065	1	0	0	1	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0040	7064	1	0	0	0	1	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0041	7065	1	0	0	1	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0042	7065	1	1	0	0	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0043	7065	1	1	0	0	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0044	7064	1	1	0	0	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0045	7063	1	1	0	0	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0046	7064	1	0	0	1	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0047	7064	1	1	0	0	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0048	7064	1	0	0	1	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0049	7064	1	1	0	0	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0050	7065	1	0	0	1	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/1	t0051	7063	1	0	0	0	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0052	7065	1	0	0	1	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0053	7064	1	0	0	1	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145