JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IGF2BP1_chr17_48992385_49061145	0/0	t0054	7064	1	0	0	0	0	1	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0055	7063	1	0	0	1	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0056	7064	1	1	0	0	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0057	7055	1	0	0	1	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0058	7065	1	0	1	0	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0059	7064	1	1	0	0	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0060	7056	1	0	0	1	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0061	7063	1	0	0	1	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0062	7063	1	1	0	0	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0063	7065	1	1	0	0	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0064	7063	1	1	0	0	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0065	7064	1	0	0	1	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0066	7065	1	0	0	0	0	1	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0067	7063	1	0	0	1	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0068	7064	1	1	0	0	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0069	7064	1	1	0	0	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0070	7065	1	1	0	0	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0071	7065	1	1	0	0	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	t0072	7065	1	1	0	0	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP2_chr3_185638130_185830042	1/0	t0001	2484	64	21	13	20	2	7	copy fasta	IGF2BP2	chr3	185638130	185830042
IGF2BP2_chr3_185638130_185830042	0/0	t0002	2483	52	18	7	17	3	7	copy fasta	IGF2BP2	chr3	185638130	185830042
IGF2BP2_chr3_185638130_185830042	0/0	t0003	2485	20	4	8	4	0	4	copy fasta	IGF2BP2	chr3	185638130	185830042
IGF2BP2_chr3_185638130_185830042	0/0	t0004	2485	19	11	2	2	0	4	copy fasta	IGF2BP2	chr3	185638130	185830042
IGF2BP2_chr3_185638130_185830042	0/1	t0005	2488	10	2	4	1	0	2	copy fasta	IGF2BP2	chr3	185638130	185830042
IGF2BP2_chr3_185638130_185830042	0/0	t0006	2486	5	3	1	0	0	1	copy fasta	IGF2BP2	chr3	185638130	185830042
IGF2BP2_chr3_185638130_185830042	0/0	t0007	2484	4	1	1	1	0	1	copy fasta	IGF2BP2	chr3	185638130	185830042
IGF2BP2_chr3_185638130_185830042	0/0	t0008	2483	4	2	2	0	0	0	copy fasta	IGF2BP2	chr3	185638130	185830042
IGF2BP2_chr3_185638130_185830042	0/0	t0009	2484	3	3	0	0	0	0	copy fasta	IGF2BP2	chr3	185638130	185830042
IGF2BP2_chr3_185638130_185830042	0/0	t0010	2484	3	0	0	3	0	0	copy fasta	IGF2BP2	chr3	185638130	185830042
IGF2BP2_chr3_185638130_185830042	0/0	t0011	2482	3	3	0	0	0	0	copy fasta	IGF2BP2	chr3	185638130	185830042
IGF2BP2_chr3_185638130_185830042	0/0	t0012	2483	2	0	0	2	0	0	copy fasta	IGF2BP2	chr3	185638130	185830042
IGF2BP2_chr3_185638130_185830042	0/0	t0013	2484	2	2	0	0	0	0	copy fasta	IGF2BP2	chr3	185638130	185830042
IGF2BP2_chr3_185638130_185830042	0/0	t0014	2483	2	2	0	0	0	0	copy fasta	IGF2BP2	chr3	185638130	185830042
IGF2BP2_chr3_185638130_185830042	0/0	t0015	2487	2	2	0	0	0	0	copy fasta	IGF2BP2	chr3	185638130	185830042
IGF2BP2_chr3_185638130_185830042	0/0	t0016	2482	2	0	2	0	0	0	copy fasta	IGF2BP2	chr3	185638130	185830042
IGF2BP2_chr3_185638130_185830042	0/0	t0017	2483	2	0	2	0	0	0	copy fasta	IGF2BP2	chr3	185638130	185830042
IGF2BP2_chr3_185638130_185830042	0/0	t0018	2485	1	0	0	0	0	1	copy fasta	IGF2BP2	chr3	185638130	185830042
IGF2BP2_chr3_185638130_185830042	0/0	t0019	2483	1	1	0	0	0	0	copy fasta	IGF2BP2	chr3	185638130	185830042
IGF2BP2_chr3_185638130_185830042	0/0	t0020	2484	1	1	0	0	0	0	copy fasta	IGF2BP2	chr3	185638130	185830042
IGF2BP2_chr3_185638130_185830042	0/0	t0021	2484	1	0	0	1	0	0	copy fasta	IGF2BP2	chr3	185638130	185830042
IGF2BP2_chr3_185638130_185830042	0/0	t0022	2483	1	0	0	1	0	0	copy fasta	IGF2BP2	chr3	185638130	185830042
IGF2BP2_chr3_185638130_185830042	0/0	t0023	2484	1	1	0	0	0	0	copy fasta	IGF2BP2	chr3	185638130	185830042
IGF2BP2_chr3_185638130_185830042	0/0	t0024	2474	1	1	0	0	0	0	copy fasta	IGF2BP2	chr3	185638130	185830042
IGF2BP2_chr3_185638130_185830042	0/0	t0025	2484	1	1	0	0	0	0	copy fasta	IGF2BP2	chr3	185638130	185830042
IGF2BP2_chr3_185638130_185830042	0/0	t0026	2472	1	1	0	0	0	0	copy fasta	IGF2BP2	chr3	185638130	185830042
IGF2BP2_chr3_185638130_185830042	0/0	t0027	2485	1	1	0	0	0	0	copy fasta	IGF2BP2	chr3	185638130	185830042
IGF2BP2_chr3_185638130_185830042	0/0	t0028	2475	1	1	0	0	0	0	copy fasta	IGF2BP2	chr3	185638130	185830042
IGF2BP2_chr3_185638130_185830042	0/0	t0029	2488	1	0	1	0	0	0	copy fasta	IGF2BP2	chr3	185638130	185830042
IGF2BP2_chr3_185638130_185830042	0/0	t0030	2484	1	1	0	0	0	0	copy fasta	IGF2BP2	chr3	185638130	185830042
IGF2BP2_chr3_185638130_185830042	0/0	t0031	2483	1	0	1	0	0	0	copy fasta	IGF2BP2	chr3	185638130	185830042