JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IGF2BP2_chr3_185638130_185830042	0/0	t0032	2484	1	0	0	0	0	1	copy fasta	IGF2BP2	chr3	185638130	185830042
IGF2BP2_chr3_185638130_185830042	0/0	t0033	2484	1	0	0	0	1	0	copy fasta	IGF2BP2	chr3	185638130	185830042
IGF2BP2_chr3_185638130_185830042	0/0	t0034	2488	1	1	0	0	0	0	copy fasta	IGF2BP2	chr3	185638130	185830042
IGF2BP3_chr7_23305209_23475491	1/0	t0001	2535	94	19	28	28	4	14	copy fasta	IGF2BP3	chr7	23305209	23475491
IGF2BP3_chr7_23305209_23475491	0/0	t0002	2539	25	24	1	0	0	0	copy fasta	IGF2BP3	chr7	23305209	23475491
IGF2BP3_chr7_23305209_23475491	0/0	t0003	2532	24	0	7	14	0	3	copy fasta	IGF2BP3	chr7	23305209	23475491
IGF2BP3_chr7_23305209_23475491	0/0	t0004	2536	17	10	1	6	0	0	copy fasta	IGF2BP3	chr7	23305209	23475491
IGF2BP3_chr7_23305209_23475491	0/0	t0005	2536	16	5	4	0	0	7	copy fasta	IGF2BP3	chr7	23305209	23475491
IGF2BP3_chr7_23305209_23475491	0/0	t0006	2535	11	3	5	2	1	0	copy fasta	IGF2BP3	chr7	23305209	23475491
IGF2BP3_chr7_23305209_23475491	0/0	t0007	2536	6	5	1	0	0	0	copy fasta	IGF2BP3	chr7	23305209	23475491
IGF2BP3_chr7_23305209_23475491	0/0	t0008	2535	5	5	0	0	0	0	copy fasta	IGF2BP3	chr7	23305209	23475491
IGF2BP3_chr7_23305209_23475491	0/0	t0009	2535	4	4	0	0	0	0	copy fasta	IGF2BP3	chr7	23305209	23475491
IGF2BP3_chr7_23305209_23475491	0/0	t0010	2532	4	1	0	0	3	0	copy fasta	IGF2BP3	chr7	23305209	23475491
IGF2BP3_chr7_23305209_23475491	0/0	t0011	2536	3	2	0	1	0	0	copy fasta	IGF2BP3	chr7	23305209	23475491
IGF2BP3_chr7_23305209_23475491	0/0	t0012	2539	2	2	0	0	0	0	copy fasta	IGF2BP3	chr7	23305209	23475491
IGF2BP3_chr7_23305209_23475491	0/0	t0013	2535	2	1	0	0	0	1	copy fasta	IGF2BP3	chr7	23305209	23475491
IGF2BP3_chr7_23305209_23475491	0/0	t0014	2534	2	0	1	0	1	0	copy fasta	IGF2BP3	chr7	23305209	23475491
IGF2BP3_chr7_23305209_23475491	0/0	t0015	2535	1	0	0	1	0	0	copy fasta	IGF2BP3	chr7	23305209	23475491
IGF2BP3_chr7_23305209_23475491	0/0	t0016	2536	1	1	0	0	0	0	copy fasta	IGF2BP3	chr7	23305209	23475491
IGF2BP3_chr7_23305209_23475491	0/0	t0017	2535	1	0	0	1	0	0	copy fasta	IGF2BP3	chr7	23305209	23475491
IGF2BP3_chr7_23305209_23475491	0/0	t0018	2536	1	1	0	0	0	0	copy fasta	IGF2BP3	chr7	23305209	23475491
IGF2BP3_chr7_23305209_23475491	0/1	t0019	2532	1	0	0	0	0	0	copy fasta	IGF2BP3	chr7	23305209	23475491
IGF2BP3_chr7_23305209_23475491	0/0	t0020	2532	1	0	0	1	0	0	copy fasta	IGF2BP3	chr7	23305209	23475491
IGF2BP3_chr7_23305209_23475491	0/0	t0021	2535	1	1	0	0	0	0	copy fasta	IGF2BP3	chr7	23305209	23475491
IGF2BP3_chr7_23305209_23475491	0/0	t0022	2535	1	0	0	0	0	1	copy fasta	IGF2BP3	chr7	23305209	23475491
IGF2BP3_chr7_23305209_23475491	0/0	t0023	2535	1	0	0	1	0	0	copy fasta	IGF2BP3	chr7	23305209	23475491
IGF2BP3_chr7_23305209_23475491	0/0	t0024	2535	1	0	0	0	0	1	copy fasta	IGF2BP3	chr7	23305209	23475491
IGF2BP3_chr7_23305209_23475491	0/0	t0025	2535	1	1	0	0	0	0	copy fasta	IGF2BP3	chr7	23305209	23475491
IGF2BP3_chr7_23305209_23475491	0/0	t0026	2535	1	1	0	0	0	0	copy fasta	IGF2BP3	chr7	23305209	23475491
IGF2BP3_chr7_23305209_23475491	0/0	t0027	2535	1	0	0	0	1	0	copy fasta	IGF2BP3	chr7	23305209	23475491
IGF2BP3_chr7_23305209_23475491	0/0	t0028	2532	1	0	0	0	0	1	copy fasta	IGF2BP3	chr7	23305209	23475491
IGF2BP3_chr7_23305209_23475491	0/0	t0029	2535	1	0	0	1	0	0	copy fasta	IGF2BP3	chr7	23305209	23475491
IGF2R_chr6_159964082_160116504	0/0	t0001	6584	43	0	9	34	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	t0002	6584	38	2	14	12	2	8	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	t0003	6584	28	2	4	16	0	6	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	t0004	6580	14	0	0	12	0	2	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	t0005	6580	13	1	7	0	1	4	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	t0006	6585	12	4	2	5	1	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/1	t0007	6582	9	4	2	0	1	1	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	t0008	6584	8	0	1	6	0	1	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	t0009	6585	7	3	0	0	0	4	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	t0010	6586	6	6	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	t0011	6587	6	6	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	t0012	6580	5	2	0	3	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	1/0	t0013	6586	5	0	3	0	1	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	t0014	6582	4	0	0	2	0	2	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	t0015	6582	4	3	1	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	t0016	6583	3	3	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	t0017	6584	3	3	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	t0018	6582	3	3	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504