JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IGF2R_chr6_159964082_160116504	0/0	t0069	6584	1	0	0	0	0	1	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	t0070	6590	1	1	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	t0071	6586	1	1	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	t0072	6591	1	1	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	t0073	6580	1	1	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	t0074	6582	1	1	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	t0075	6583	1	1	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	t0076	6583	1	1	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	t0077	6585	1	0	0	1	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	t0078	6584	1	1	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	t0079	6584	1	1	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	t0080	6584	1	0	1	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	t0081	6584	1	0	0	0	0	1	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	t0082	6581	1	0	0	0	1	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	t0083	6584	1	1	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	t0084	6584	1	0	0	0	1	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	t0085	6587	1	0	0	0	1	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	t0086	6586	1	0	0	1	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	t0087	6590	1	0	0	0	0	1	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	t0088	6582	1	0	1	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	t0089	6582	1	1	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	t0090	6584	1	0	0	1	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	t0091	6586	1	0	0	1	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	t0092	6587	1	0	0	1	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	t0093	6584	1	0	1	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	t0094	6580	1	1	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2_chr11_2124117_2144389	0/0	t0001	5035	49	0	5	36	3	5	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0002	5049	15	2	0	10	0	3	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0003	5048	13	0	6	2	4	1	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0004	5049	13	1	0	11	0	1	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0005	5036	9	0	2	4	2	1	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0006	5056	6	5	1	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0007	5073	6	6	0	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0008	5050	6	1	0	4	0	1	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0009	5036	5	1	1	2	0	1	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0010	5035	5	0	0	4	0	1	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0011	5049	5	0	3	2	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0012	5056	5	0	4	0	0	1	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0013	5049	4	0	0	4	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0014	5048	4	0	0	3	0	1	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0015	5050	4	0	2	1	1	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0016	5050	3	0	1	2	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0017	5050	3	0	0	2	0	1	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0018	5048	3	0	2	1	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0019	5049	3	0	1	0	1	1	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0020	5054	3	3	0	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0021	5056	3	2	1	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0022	5055	3	3	0	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0023	5048	3	0	3	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0024	5049	3	0	0	0	1	2	copy fasta	IGF2	chr11	2124117	2144389