JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IGF2_chr11_2124117_2144389	0/0	t0025	5051	3	0	2	1	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0026	5051	2	0	1	1	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0027	5036	2	0	1	1	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0028	5049	2	1	0	0	1	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0029	5050	2	0	0	1	0	1	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0030	5052	2	0	0	2	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0031	5056	2	0	1	0	1	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0032	5049	2	0	1	0	0	1	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0033	5051	2	0	0	2	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0034	5051	2	0	2	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0035	5051	2	0	0	2	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0036	5051	2	2	0	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0037	5053	2	2	0	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0038	5048	2	0	0	2	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0039	5048	2	0	0	2	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0040	5023	2	2	0	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0041	5049	2	0	0	2	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0042	5055	2	2	0	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0043	5049	2	0	2	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0044	5055	2	2	0	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0045	5048	2	0	2	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0046	5057	2	2	0	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0047	5050	2	0	0	2	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0048	5049	2	0	2	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0049	5050	2	0	0	2	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0050	5051	2	0	1	0	0	1	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0051	5052	2	2	0	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0052	5050	1	0	1	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0053	5053	1	1	0	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0054	5051	1	0	0	1	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0055	5051	1	0	0	1	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0056	5037	1	0	0	1	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0057	5024	1	0	1	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0058	5050	1	0	0	1	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0059	5058	1	0	1	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0060	5052	1	0	0	1	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0061	5039	1	0	0	1	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0062	5052	1	0	1	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0063	5055	1	1	0	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0064	5037	1	0	0	0	0	1	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0065	5056	1	1	0	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0066	5037	1	0	0	1	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0067	5049	1	0	1	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0068	5075	1	1	0	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0069	5076	1	0	0	1	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0070	5037	1	0	0	1	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0071	5050	1	0	0	1	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0072	5050	1	0	1	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0073	5050	1	0	1	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0074	5051	1	0	1	0	0	0	copy fasta	IGF2	chr11	2124117	2144389