JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IGF2_chr11_2124117_2144389	0/0	t0075	5033	1	0	0	0	0	1	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0076	5057	1	0	0	0	1	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0077	5049	1	1	0	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0078	5035	1	0	0	0	0	1	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0079	5052	1	0	0	1	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0080	5055	1	1	0	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0081	5058	1	1	0	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0082	5051	1	0	0	0	0	1	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0083	5051	1	0	0	1	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0084	5073	1	1	0	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0085	5038	1	0	0	0	1	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0086	5047	1	1	0	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0087	5050	1	0	1	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0088	5052	1	0	1	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0089	5049	1	0	0	1	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0090	5008	1	0	0	1	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0091	5036	1	0	0	1	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0092	5055	1	1	0	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	1/0	t0093	5038	1	0	0	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0094	5049	1	0	0	1	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0095	5057	1	1	0	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0096	5059	1	1	0	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0097	5037	1	0	0	1	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0098	5038	1	0	1	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0099	5038	1	0	0	1	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0100	5055	1	1	0	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0101	5050	1	0	1	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0102	5050	1	0	0	1	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0103	5050	1	0	0	1	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0104	5051	1	0	0	0	0	1	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0105	5052	1	0	0	0	0	1	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0106	5052	1	0	1	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0107	5056	1	0	0	1	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0108	5023	1	0	1	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0109	5057	1	1	0	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0110	5054	1	1	0	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0111	5025	1	0	0	1	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0112	5054	1	0	1	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0113	5035	1	0	0	1	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0114	5049	1	0	0	1	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0115	5036	1	0	0	0	0	1	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0116	5036	1	0	0	1	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0117	5054	1	1	0	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0118	5054	1	1	0	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0119	5057	1	1	0	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0120	5073	1	1	0	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0121	5048	1	0	0	1	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0122	5035	1	0	0	1	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0123	5035	1	1	0	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0124	5035	1	0	0	0	0	1	copy fasta	IGF2	chr11	2124117	2144389