JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IGF2_chr11_2124117_2144389	0/0	t0175	5050	1	0	0	1	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0176	5050	1	0	1	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0177	5048	1	0	0	1	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0178	5049	1	0	0	0	0	1	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0179	5049	1	0	1	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0180	5055	1	0	1	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0181	5058	1	1	0	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0182	5050	1	0	0	1	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0183	5057	1	1	0	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0184	5050	1	0	0	1	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0185	5051	1	0	1	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0186	5050	1	0	0	1	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0187	5055	1	0	1	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0188	5048	1	0	0	1	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0189	5022	1	1	0	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0190	5050	1	1	0	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0191	5021	1	1	0	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0192	5022	1	1	0	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0193	5022	1	0	1	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0194	5047	1	1	0	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0195	5054	1	1	0	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0196	5055	1	1	0	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0197	5048	1	1	0	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0198	5024	1	1	0	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0199	5022	1	1	0	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0200	5053	1	1	0	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0201	5054	1	1	0	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0202	5051	1	0	1	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0203	5049	1	0	0	1	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0204	5050	1	0	0	1	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0205	5050	1	0	0	1	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0206	5038	1	0	0	0	0	1	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0207	5035	1	0	0	0	0	1	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	t0208	5057	1	1	0	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGFALS_chr16_1785413_1798705	0/0	t0001	241	272	67	53	105	14	33	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	1/1	t0002	241	176	25	25	105	2	17	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	t0003	241	1	1	0	0	0	0	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	t0004	241	1	1	0	0	0	0	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	t0005	241	1	0	0	1	0	0	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	t0006	241	1	0	0	1	0	0	copy fasta	IGFALS	chr16	1785413	1798705
IGFBP1_chr7_45883488_45898660	1/1	t0001	735	431	93	75	207	15	39	copy fasta	IGFBP1	chr7	45883488	45898660
IGFBP1_chr7_45883488_45898660	0/0	t0002	735	6	1	0	0	1	4	copy fasta	IGFBP1	chr7	45883488	45898660
IGFBP1_chr7_45883488_45898660	0/0	t0003	735	5	4	1	0	0	0	copy fasta	IGFBP1	chr7	45883488	45898660
IGFBP1_chr7_45883488_45898660	0/0	t0004	735	1	0	1	0	0	0	copy fasta	IGFBP1	chr7	45883488	45898660
IGFBP1_chr7_45883488_45898660	0/0	t0005	735	1	0	1	0	0	0	copy fasta	IGFBP1	chr7	45883488	45898660
IGFBP1_chr7_45883488_45898660	0/0	t0006	735	1	0	0	1	0	0	copy fasta	IGFBP1	chr7	45883488	45898660
IGFBP1_chr7_45883488_45898660	0/0	t0007	735	1	0	0	0	0	1	copy fasta	IGFBP1	chr7	45883488	45898660
IGFBP2_chr2_216628420_216669436	1/1	t0001	437	358	85	59	158	12	42	copy fasta	IGFBP2	chr2	216628420	216669436
IGFBP2_chr2_216628420_216669436	0/0	t0002	442	20	0	5	15	0	0	copy fasta	IGFBP2	chr2	216628420	216669436
IGFBP2_chr2_216628420_216669436	0/0	t0003	437	8	8	0	0	0	0	copy fasta	IGFBP2	chr2	216628420	216669436