JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IGFBP2_chr2_216628420_216669436	0/0	t0004	437	5	0	0	2	0	3	copy fasta	IGFBP2	chr2	216628420	216669436
IGFBP2_chr2_216628420_216669436	0/0	t0005	437	5	5	0	0	0	0	copy fasta	IGFBP2	chr2	216628420	216669436
IGFBP2_chr2_216628420_216669436	0/0	t0006	437	2	0	1	0	0	1	copy fasta	IGFBP2	chr2	216628420	216669436
IGFBP2_chr2_216628420_216669436	0/0	t0007	437	1	1	0	0	0	0	copy fasta	IGFBP2	chr2	216628420	216669436
IGFBP2_chr2_216628420_216669436	0/0	t0008	442	1	1	0	0	0	0	copy fasta	IGFBP2	chr2	216628420	216669436
IGFBP2_chr2_216628420_216669436	0/0	t0009	437	1	0	1	0	0	0	copy fasta	IGFBP2	chr2	216628420	216669436
IGFBP2_chr2_216628420_216669436	0/0	t0010	437	1	0	0	1	0	0	copy fasta	IGFBP2	chr2	216628420	216669436
IGFBP3_chr7_45907245_45926272	1/1	t0001	1738	352	71	55	193	10	21	copy fasta	IGFBP3	chr7	45907245	45926272
IGFBP3_chr7_45907245_45926272	0/0	t0002	1738	46	8	14	4	3	17	copy fasta	IGFBP3	chr7	45907245	45926272
IGFBP3_chr7_45907245_45926272	0/0	t0003	1737	14	0	10	1	2	1	copy fasta	IGFBP3	chr7	45907245	45926272
IGFBP3_chr7_45907245_45926272	0/0	t0004	1738	4	0	1	0	0	3	copy fasta	IGFBP3	chr7	45907245	45926272
IGFBP3_chr7_45907245_45926272	0/0	t0005	1738	3	3	0	0	0	0	copy fasta	IGFBP3	chr7	45907245	45926272
IGFBP3_chr7_45907245_45926272	0/0	t0006	1719	3	3	0	0	0	0	copy fasta	IGFBP3	chr7	45907245	45926272
IGFBP3_chr7_45907245_45926272	0/0	t0007	1738	2	2	0	0	0	0	copy fasta	IGFBP3	chr7	45907245	45926272
IGFBP3_chr7_45907245_45926272	0/0	t0008	1738	2	0	0	2	0	0	copy fasta	IGFBP3	chr7	45907245	45926272
IGFBP3_chr7_45907245_45926272	0/0	t0009	1738	1	0	0	0	0	1	copy fasta	IGFBP3	chr7	45907245	45926272
IGFBP3_chr7_45907245_45926272	0/0	t0010	1738	1	0	1	0	0	0	copy fasta	IGFBP3	chr7	45907245	45926272
IGFBP3_chr7_45907245_45926272	0/0	t0011	1758	1	1	0	0	0	0	copy fasta	IGFBP3	chr7	45907245	45926272
IGFBP3_chr7_45907245_45926272	0/0	t0012	1738	1	1	0	0	0	0	copy fasta	IGFBP3	chr7	45907245	45926272
IGFBP3_chr7_45907245_45926272	0/0	t0013	1738	1	0	0	0	0	1	copy fasta	IGFBP3	chr7	45907245	45926272
IGFBP3_chr7_45907245_45926272	0/0	t0014	1738	1	1	0	0	0	0	copy fasta	IGFBP3	chr7	45907245	45926272
IGFBP3_chr7_45907245_45926272	0/0	t0015	1738	1	1	0	0	0	0	copy fasta	IGFBP3	chr7	45907245	45926272
IGFBP3_chr7_45907245_45926272	0/0	t0016	1737	1	1	0	0	0	0	copy fasta	IGFBP3	chr7	45907245	45926272
IGFBP3_chr7_45907245_45926272	0/0	t0017	1737	1	0	0	0	1	0	copy fasta	IGFBP3	chr7	45907245	45926272
IGFBP3_chr7_45907245_45926272	0/0	t0018	1738	1	0	1	0	0	0	copy fasta	IGFBP3	chr7	45907245	45926272
IGFBP4_chr17_40438450_40462725	1/0	t0001	1429	332	40	78	149	18	46	copy fasta	IGFBP4	chr17	40438450	40462725
IGFBP4_chr17_40438450_40462725	0/0	t0002	1429	33	31	2	0	0	0	copy fasta	IGFBP4	chr17	40438450	40462725
IGFBP4_chr17_40438450_40462725	0/0	t0003	1429	5	0	0	5	0	0	copy fasta	IGFBP4	chr17	40438450	40462725
IGFBP4_chr17_40438450_40462725	0/0	t0004	1429	4	4	0	0	0	0	copy fasta	IGFBP4	chr17	40438450	40462725
IGFBP4_chr17_40438450_40462725	0/0	t0005	1429	4	4	0	0	0	0	copy fasta	IGFBP4	chr17	40438450	40462725
IGFBP4_chr17_40438450_40462725	0/0	t0006	1429	3	3	0	0	0	0	copy fasta	IGFBP4	chr17	40438450	40462725
IGFBP4_chr17_40438450_40462725	0/0	t0007	1429	2	2	0	0	0	0	copy fasta	IGFBP4	chr17	40438450	40462725
IGFBP4_chr17_40438450_40462725	0/0	t0008	1429	1	0	0	0	0	1	copy fasta	IGFBP4	chr17	40438450	40462725
IGFBP4_chr17_40438450_40462725	0/0	t0009	1429	1	1	0	0	0	0	copy fasta	IGFBP4	chr17	40438450	40462725
IGFBP4_chr17_40438450_40462725	0/0	t0010	1429	1	0	0	0	0	1	copy fasta	IGFBP4	chr17	40438450	40462725
IGFBP4_chr17_40438450_40462725	0/1	t0011	1429	1	0	0	0	0	0	copy fasta	IGFBP4	chr17	40438450	40462725
IGFBP4_chr17_40438450_40462725	0/0	t0012	1429	1	1	0	0	0	0	copy fasta	IGFBP4	chr17	40438450	40462725
IGFBP4_chr17_40438450_40462725	0/0	t0013	1429	1	1	0	0	0	0	copy fasta	IGFBP4	chr17	40438450	40462725
IGFBP4_chr17_40438450_40462725	0/0	t0014	1429	1	1	0	0	0	0	copy fasta	IGFBP4	chr17	40438450	40462725
IGFBP5_chr2_216667105_216700549	1/1	t0001	5421	251	26	67	109	14	33	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0002	5422	24	13	1	8	0	2	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0003	5422	15	3	0	12	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0004	5424	11	3	0	7	0	1	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0005	5421	9	0	0	9	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0006	5424	8	0	2	6	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0007	5422	6	0	1	3	0	2	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0008	5425	6	0	1	2	0	3	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0009	5419	5	5	0	0	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0010	5425	5	5	0	0	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0011	5420	4	4	0	0	0	0	copy fasta	IGFBP5	chr2	216667105	216700549