JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
IGFBP5_chr2_216667105_216700549	0/0	t0012	5421	4	0	0	4	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0013	5420	4	4	0	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0014	5421	3	0	0	3	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0015	5421	3	3	0	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0016	5421	3	3	0	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0017	5421	3	3	0	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0018	5423	2	0	0	2	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0019	5421	2	0	2	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0020	5420	2	2	0	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0021	5421	2	0	0	2	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0022	5421	2	0	0	2	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0023	5422	2	2	0	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0024	5421	1	1	0	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0025	5423	1	1	0	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0026	5422	1	1	0	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0027	5422	1	0	0	1	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0028	5422	1	1	0	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0029	5421	1	0	0	1	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0030	5421	1	0	0	0	1	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0031	5420	1	1	0	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0032	5420	1	1	0	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0033	5419	1	1	0	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0034	5420	1	1	0	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0035	5420	1	1	0	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0036	5422	1	0	0	1	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0037	5420	1	0	0	1	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0038	5421	1	0	0	1	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0039	5422	1	0	0	1	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0040	5421	1	0	0	0	1	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0041	5421	1	0	1	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0042	5421	1	0	0	1	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0043	5421	1	0	0	1	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0044	5423	1	1	0	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0045	5423	1	1	0	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0046	5421	1	0	0	1	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0047	5420	1	0	1	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0048	5420	1	1	0	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0049	5422	1	1	0	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0050	5421	1	1	0	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0051	5422	1	0	0	1	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0052	5421	1	0	0	1	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0053	5421	1	0	0	1	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0054	5421	1	1	0	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0055	5420	1	1	0	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0056	5422	1	0	0	1	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0057	5421	1	0	0	0	1	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0058	5421	1	1	0	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0059	5426	1	1	0	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0060	5425	1	1	0	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0061	5420	1	1	0	0	0	copy fasta	IGFBP5	chr2	216667105	216700549