JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IGFBP5_chr2_216667105_216700549	0/0	t0062	5421	1	1	0	0	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0063	5421	1	0	1	0	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0064	5422	1	0	1	0	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0065	5421	1	1	0	0	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0066	5421	1	1	0	0	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0067	5421	1	1	0	0	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0068	5422	1	0	0	1	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	t0069	5421	1	0	0	1	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP6_chr12_53092667_53107340	1/1	t0001	225	415	97	72	186	10	48	copy fasta	IGFBP6	chr12	53092667	53107340
IGFBP6_chr12_53092667_53107340	0/0	t0002	225	1	1	0	0	0	0	copy fasta	IGFBP6	chr12	53092667	53107340
IGFBP7_chr4_57025773_57115385	1/1	t0001	579	341	94	72	127	8	38	copy fasta	IGFBP7	chr4	57025773	57115385
IGFBP7_chr4_57025773_57115385	0/0	t0002	579	4	0	0	4	0	0	copy fasta	IGFBP7	chr4	57025773	57115385
IGFBP7_chr4_57025773_57115385	0/0	t0003	579	1	0	0	1	0	0	copy fasta	IGFBP7	chr4	57025773	57115385
IGFBPL1_chr9_38401528_38429454	0/0	t0001	2723	121	9	24	75	2	11	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	1/1	t0002	2730	44	13	10	15	0	4	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0003	2729	38	0	11	19	1	7	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0004	2735	32	9	4	11	5	3	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0005	2734	27	2	7	16	0	2	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0006	2740	26	1	8	7	2	8	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0007	2739	22	4	2	9	1	6	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0008	2730	19	0	2	17	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0009	2736	8	5	1	0	0	2	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0010	2735	7	0	0	7	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0011	2737	6	6	0	0	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0012	2730	6	5	1	0	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0013	2735	6	1	3	2	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0014	2730	6	2	1	2	0	1	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0015	2722	6	6	0	0	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0016	2731	5	2	1	1	0	1	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0017	2734	5	5	0	0	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0018	2730	3	0	0	3	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0019	2731	3	0	0	3	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0020	2730	3	3	0	0	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0021	2730	3	3	0	0	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0022	2735	3	0	2	0	0	1	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0023	2735	2	1	1	0	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0024	2736	2	2	0	0	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0025	2731	2	0	0	2	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0026	2736	2	0	0	2	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0027	2734	2	1	0	1	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0028	2736	2	0	0	2	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0029	2736	2	2	0	0	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0030	2738	2	0	2	0	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0031	2739	2	0	0	0	0	2	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0032	2724	2	0	0	2	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0033	2740	2	0	2	0	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0034	2734	1	1	0	0	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0035	2735	1	1	0	0	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0036	2738	1	0	1	0	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0037	2729	1	0	0	1	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454