JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IGFBPL1_chr9_38401528_38429454	0/0	t0038	2793	1	0	0	1	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0039	2729	1	0	1	0	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0040	2729	1	1	0	0	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0041	2732	1	1	0	0	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0042	2737	1	0	0	1	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0043	2733	1	1	0	0	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0044	2723	1	0	0	0	0	1	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0045	2734	1	0	0	1	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0046	2734	1	1	0	0	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0047	2735	1	1	0	0	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0048	2736	1	0	0	1	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0049	2737	1	0	0	0	1	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0050	2737	1	1	0	0	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0051	2738	1	1	0	0	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0052	2722	1	0	0	1	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0053	2723	1	0	1	0	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0054	2723	1	0	0	0	0	1	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0055	2739	1	1	0	0	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0056	2740	1	1	0	0	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0057	2723	1	0	0	1	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0058	2723	1	1	0	0	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0059	2738	1	0	0	1	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	t0060	2735	1	0	1	0	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFL1_chr19_46224742_46236243	1/0	t0001	447	223	41	54	101	5	21	copy fasta	IGFL1	chr19	46224742	46236243
IGFL1_chr19_46224742_46236243	0/1	t0002	447	202	50	25	97	5	24	copy fasta	IGFL1	chr19	46224742	46236243
IGFL1_chr19_46224742_46236243	0/0	t0003	447	4	3	1	0	0	0	copy fasta	IGFL1	chr19	46224742	46236243
IGFL1_chr19_46224742_46236243	0/0	t0004	447	2	2	0	0	0	0	copy fasta	IGFL1	chr19	46224742	46236243
IGFL1_chr19_46224742_46236243	0/0	t0005	447	1	1	0	0	0	0	copy fasta	IGFL1	chr19	46224742	46236243
IGFL1_chr19_46224742_46236243	0/0	t0006	447	1	1	0	0	0	0	copy fasta	IGFL1	chr19	46224742	46236243
IGFL1_chr19_46224742_46236243	0/0	t0007	447	1	0	0	0	0	1	copy fasta	IGFL1	chr19	46224742	46236243
IGFL2_chr19_46143238_46166289	0/1	t0001	243	227	56	31	99	13	27	copy fasta	IGFL2	chr19	46143238	46166289
IGFL2_chr19_46143238_46166289	1/0	t0002	243	211	28	34	128	5	15	copy fasta	IGFL2	chr19	46143238	46166289
IGFL2_chr19_46143238_46166289	0/0	t0003	243	13	12	1	0	0	0	copy fasta	IGFL2	chr19	46143238	46166289
IGFL2_chr19_46143238_46166289	0/0	t0004	243	1	0	0	1	0	0	copy fasta	IGFL2	chr19	46143238	46166289
IGFL3_chr19_46115067_46129688	0/0	t0000	0	32	10	3	14	1	4	copy fasta	IGFL3	chr19	46115067	46129688
IGFL3_chr19_46115067_46129688	1/1	t0001	303	393	73	74	192	13	39	copy fasta	IGFL3	chr19	46115067	46129688
IGFL3_chr19_46115067_46129688	0/0	t0002	304	5	5	0	0	0	0	copy fasta	IGFL3	chr19	46115067	46129688
IGFL3_chr19_46115067_46129688	0/0	t0003	303	1	0	0	0	0	1	copy fasta	IGFL3	chr19	46115067	46129688
IGFL3_chr19_46115067_46129688	0/0	t0004	303	1	0	1	0	0	0	copy fasta	IGFL3	chr19	46115067	46129688
IGFL4_chr19_46034182_46046002	1/0	t0001	751	403	60	65	218	14	45	copy fasta	IGFL4	chr19	46034182	46046002
IGFL4_chr19_46034182_46046002	0/1	t0002	751	23	11	7	0	3	1	copy fasta	IGFL4	chr19	46034182	46046002
IGFL4_chr19_46034182_46046002	0/0	t0003	754	18	12	6	0	0	0	copy fasta	IGFL4	chr19	46034182	46046002
IGFL4_chr19_46034182_46046002	0/0	t0004	751	3	3	0	0	0	0	copy fasta	IGFL4	chr19	46034182	46046002
IGFL4_chr19_46034182_46046002	0/0	t0005	754	2	2	0	0	0	0	copy fasta	IGFL4	chr19	46034182	46046002
IGFL4_chr19_46034182_46046002	0/0	t0006	751	1	1	0	0	0	0	copy fasta	IGFL4	chr19	46034182	46046002
IGFL4_chr19_46034182_46046002	0/0	t0007	751	1	1	0	0	0	0	copy fasta	IGFL4	chr19	46034182	46046002
IGFL4_chr19_46034182_46046002	0/0	t0008	751	1	0	0	0	1	0	copy fasta	IGFL4	chr19	46034182	46046002
IGFL4_chr19_46034182_46046002	0/0	t0009	751	1	1	0	0	0	0	copy fasta	IGFL4	chr19	46034182	46046002
IGFL4_chr19_46034182_46046002	0/0	t0010	754	1	1	0	0	0	0	copy fasta	IGFL4	chr19	46034182	46046002
IGFLR1_chr19_35733801_35747452	1/0	t0001	580	368	85	58	168	13	43	copy fasta	IGFLR1	chr19	35733801	35747452