JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IGFLR1_chr19_35733801_35747452	0/1	t0002	580	26	3	18	0	1	3	copy fasta	IGFLR1	chr19	35733801	35747452
IGFLR1_chr19_35733801_35747452	0/0	t0003	580	5	5	0	0	0	0	copy fasta	IGFLR1	chr19	35733801	35747452
IGFLR1_chr19_35733801_35747452	0/0	t0004	580	2	0	0	2	0	0	copy fasta	IGFLR1	chr19	35733801	35747452
IGFLR1_chr19_35733801_35747452	0/0	t0005	580	2	2	0	0	0	0	copy fasta	IGFLR1	chr19	35733801	35747452
IGFLR1_chr19_35733801_35747452	0/0	t0006	580	1	0	0	1	0	0	copy fasta	IGFLR1	chr19	35733801	35747452
IGFLR1_chr19_35733801_35747452	0/0	t0007	580	1	0	0	1	0	0	copy fasta	IGFLR1	chr19	35733801	35747452
IGFLR1_chr19_35733801_35747452	0/0	t0008	580	1	1	0	0	0	0	copy fasta	IGFLR1	chr19	35733801	35747452
IGFN1_chr1_201185824_201233952	0/0	t0001	685	149	11	29	88	2	19	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	1/1	t0002	685	109	35	21	30	4	17	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	t0003	685	85	6	10	62	3	4	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	t0004	685	29	26	1	2	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	t0005	685	16	2	3	4	5	2	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	t0006	685	13	0	8	1	3	1	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	t0007	685	8	3	4	0	1	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	t0008	685	7	1	2	2	0	2	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	t0009	685	6	6	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	t0010	685	2	2	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	t0011	685	1	0	0	0	0	1	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	t0012	685	1	0	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	t0013	685	1	1	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	t0014	685	1	1	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGHMBP2_chr11_68898891_68945601	1/0	t0001	933	136	37	12	72	4	10	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	t0002	933	106	24	25	35	3	19	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/1	t0003	933	56	1	11	35	3	5	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	t0004	933	19	2	10	0	5	2	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	t0005	933	16	6	4	4	1	1	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	t0006	933	15	12	2	0	0	1	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	t0007	933	5	0	0	5	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	t0008	933	3	0	0	3	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	t0009	933	2	0	0	2	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	t0010	933	2	0	0	0	0	2	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	t0011	933	2	0	0	2	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	t0012	933	2	2	0	0	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	t0013	933	1	1	0	0	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	t0014	933	1	0	0	1	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	t0015	933	1	0	0	1	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	t0016	933	1	0	0	1	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	t0017	933	1	1	0	0	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	t0018	933	1	1	0	0	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	t0019	933	1	0	0	1	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	t0020	933	1	0	0	1	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	t0021	933	1	0	0	1	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	t0022	933	1	1	0	0	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGIP_chr5_140120937_140134392	1/0	t0001	3295	250	50	51	102	10	36	copy fasta	IGIP	chr5	140120937	140134392
IGIP_chr5_140120937_140134392	0/1	t0002	3295	55	24	13	5	2	10	copy fasta	IGIP	chr5	140120937	140134392
IGIP_chr5_140120937_140134392	0/0	t0003	3295	1	0	0	1	0	0	copy fasta	IGIP	chr5	140120937	140134392
IGIP_chr5_140120937_140134392	0/0	t0004	3295	1	1	0	0	0	0	copy fasta	IGIP	chr5	140120937	140134392
IGIP_chr5_140120937_140134392	0/0	t0005	3295	1	0	0	1	0	0	copy fasta	IGIP	chr5	140120937	140134392
IGIP_chr5_140120937_140134392	0/0	t0006	3295	1	0	0	0	1	0	copy fasta	IGIP	chr5	140120937	140134392
IGIP_chr5_140120937_140134392	0/0	t0007	3295	1	0	0	1	0	0	copy fasta	IGIP	chr5	140120937	140134392