JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IGIP_chr5_140120937_140134392	0/0	t0008	3295	1	0	0	0	1	0	copy fasta	IGIP	chr5	140120937	140134392
IGIP_chr5_140120937_140134392	0/0	t0009	3295	1	1	0	0	0	0	copy fasta	IGIP	chr5	140120937	140134392
IGIP_chr5_140120937_140134392	0/0	t0010	3295	1	0	0	1	0	0	copy fasta	IGIP	chr5	140120937	140134392
IGIP_chr5_140120937_140134392	0/0	t0011	3295	1	0	0	1	0	0	copy fasta	IGIP	chr5	140120937	140134392
IGLL1_chr22_23568125_23585290	1/1	t0001	242	390	59	67	217	10	35	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	t0002	242	44	32	5	0	2	5	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	t0003	242	32	2	14	5	6	5	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	t0004	242	5	0	0	0	0	5	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	t0005	242	1	1	0	0	0	0	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	t0006	242	1	1	0	0	0	0	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	t0007	242	1	1	0	0	0	0	copy fasta	IGLL1	chr22	23568125	23585290
IGLL5_chr22_22882816_22901111	0/1	t0001	656	109	4	27	66	2	9	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	t0002	656	60	18	12	15	4	11	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	t0003	656	37	3	1	31	0	2	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	1/0	t0004	656	29	7	10	2	1	8	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	t0005	656	22	8	2	9	0	3	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	t0006	656	14	8	2	3	0	1	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	t0007	656	10	7	1	1	0	1	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	t0008	656	7	7	0	0	0	0	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	t0009	656	3	3	0	0	0	0	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	t0010	656	1	1	0	0	0	0	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	t0011	656	1	0	0	1	0	0	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	t0012	656	1	0	1	0	0	0	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	t0013	656	1	1	0	0	0	0	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	t0014	656	1	1	0	0	0	0	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	t0015	656	1	0	0	0	0	1	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	t0016	656	1	0	1	0	0	0	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	t0017	635	1	0	0	1	0	0	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	t0018	656	1	0	0	1	0	0	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	t0019	656	1	0	0	0	1	0	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	t0020	656	1	0	1	0	0	0	copy fasta	IGLL5	chr22	22882816	22901111
IGLON5_chr19_51306644_51335891	0/0	t0001	2338	122	17	37	52	4	12	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0002	2338	58	2	10	29	2	15	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0003	2337	30	3	1	21	1	4	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0004	2334	26	17	2	4	2	1	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0005	2339	16	0	1	10	1	4	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0006	2340	12	1	0	9	1	1	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0007	2336	11	9	2	0	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0008	2334	9	9	0	0	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0009	2339	8	1	1	5	1	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0010	2333	6	3	2	1	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0011	2340	5	0	0	5	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0012	2342	5	1	2	0	2	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0013	2340	5	0	0	3	0	2	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0014	2339	5	0	1	2	0	2	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0015	2338	4	0	0	3	0	1	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0016	2339	4	0	3	1	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0017	2335	3	3	0	0	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0018	2328	3	3	0	0	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0019	2336	3	3	0	0	0	0	copy fasta	IGLON5	chr19	51306644	51335891