JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IGLON5_chr19_51306644_51335891	0/0	t0020	2339	3	0	1	2	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0021	2340	3	0	0	3	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0022	2339	2	0	0	2	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0023	2339	2	0	0	2	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0024	2339	2	0	0	1	0	1	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0025	2341	2	0	1	1	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0026	2341	2	1	0	1	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0027	2339	2	0	1	1	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0028	2338	2	1	0	0	1	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0029	2338	2	2	0	0	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0030	2336	2	2	0	0	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0031	2338	2	2	0	0	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0032	2344	2	0	2	0	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0033	2334	2	2	0	0	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0034	2336	1	0	0	1	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0035	2339	1	0	0	1	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0036	2338	1	0	0	1	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0037	2338	1	0	0	1	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0038	2337	1	0	0	1	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0039	2337	1	0	0	1	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0040	2342	1	0	0	1	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0041	2339	1	0	0	0	0	1	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0042	2334	1	0	0	0	1	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0043	2340	1	0	0	1	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0044	2335	1	0	1	0	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0045	2336	1	1	0	0	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0046	2334	1	0	0	0	0	1	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0047	2336	1	0	0	1	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0048	2334	1	1	0	0	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0049	2340	1	0	0	1	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0050	2333	1	1	0	0	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0051	2337	1	0	0	0	0	1	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0052	2341	1	0	0	0	0	1	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0053	2340	1	1	0	0	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0054	2342	1	0	0	1	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0055	2342	1	0	1	0	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0056	2340	1	0	0	0	0	1	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0057	2335	1	1	0	0	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0058	2335	1	1	0	0	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0059	2338	1	0	0	1	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0060	2340	1	0	1	0	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0061	2337	1	1	0	0	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0062	2335	1	1	0	0	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0063	2343	1	0	0	1	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0064	2337	1	0	0	1	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0065	2314	1	0	0	1	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/1	t0066	2338	1	0	0	0	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0067	2336	1	1	0	0	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0068	2338	1	0	1	0	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0069	2336	1	0	0	1	0	0	copy fasta	IGLON5	chr19	51306644	51335891