JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IGLON5_chr19_51306644_51335891	0/0	t0070	2338	1	0	0	1	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0071	2338	1	0	0	1	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0072	2338	1	0	0	1	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0073	2336	1	1	0	0	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	1/0	t0074	2337	1	0	0	0	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0075	2339	1	0	0	1	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0076	2343	1	0	0	1	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0077	2336	1	0	1	0	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0078	2335	1	0	0	1	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0079	2334	1	0	0	1	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0080	2338	1	0	1	0	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0081	2340	1	0	1	0	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0082	2338	1	1	0	0	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0083	2335	1	1	0	0	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0084	2335	1	1	0	0	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0085	2345	1	1	0	0	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	t0086	2337	1	0	0	1	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGSF10_chr3_151431203_151466061	1/1	t0001	690	305	58	55	136	12	42	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	t0002	690	45	8	10	18	5	4	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	t0003	690	41	9	4	26	1	1	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	t0004	685	10	1	0	9	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	t0005	690	8	8	0	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	t0006	690	5	5	0	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	t0007	690	5	4	1	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	t0008	693	3	0	2	0	0	1	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	t0009	690	1	0	0	1	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	t0010	690	1	1	0	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF11_chr3_118895557_119039846	1/0	t0001	2228	147	19	24	71	9	23	copy fasta	IGSF11	chr3	118895557	119039846
IGSF11_chr3_118895557_119039846	0/0	t0002	2227	48	18	7	13	0	10	copy fasta	IGSF11	chr3	118895557	119039846
IGSF11_chr3_118895557_119039846	0/1	t0003	2229	43	1	7	26	4	4	copy fasta	IGSF11	chr3	118895557	119039846
IGSF11_chr3_118895557_119039846	0/0	t0004	2227	21	0	5	14	2	0	copy fasta	IGSF11	chr3	118895557	119039846
IGSF11_chr3_118895557_119039846	0/0	t0005	2226	20	0	6	14	0	0	copy fasta	IGSF11	chr3	118895557	119039846
IGSF11_chr3_118895557_119039846	0/0	t0006	2227	19	8	4	3	1	3	copy fasta	IGSF11	chr3	118895557	119039846
IGSF11_chr3_118895557_119039846	0/0	t0007	2227	15	15	0	0	0	0	copy fasta	IGSF11	chr3	118895557	119039846
IGSF11_chr3_118895557_119039846	0/0	t0008	2229	8	6	1	1	0	0	copy fasta	IGSF11	chr3	118895557	119039846
IGSF11_chr3_118895557_119039846	0/0	t0009	2228	4	0	3	0	0	1	copy fasta	IGSF11	chr3	118895557	119039846
IGSF11_chr3_118895557_119039846	0/0	t0010	2227	4	4	0	0	0	0	copy fasta	IGSF11	chr3	118895557	119039846
IGSF11_chr3_118895557_119039846	0/0	t0011	2228	3	0	2	0	0	1	copy fasta	IGSF11	chr3	118895557	119039846
IGSF11_chr3_118895557_119039846	0/0	t0012	2228	3	3	0	0	0	0	copy fasta	IGSF11	chr3	118895557	119039846
IGSF11_chr3_118895557_119039846	0/0	t0013	2227	3	3	0	0	0	0	copy fasta	IGSF11	chr3	118895557	119039846
IGSF11_chr3_118895557_119039846	0/0	t0014	2227	2	0	2	0	0	0	copy fasta	IGSF11	chr3	118895557	119039846
IGSF11_chr3_118895557_119039846	0/0	t0015	2227	2	2	0	0	0	0	copy fasta	IGSF11	chr3	118895557	119039846
IGSF11_chr3_118895557_119039846	0/0	t0016	2227	2	0	0	0	0	2	copy fasta	IGSF11	chr3	118895557	119039846
IGSF11_chr3_118895557_119039846	0/0	t0017	2228	2	0	0	2	0	0	copy fasta	IGSF11	chr3	118895557	119039846
IGSF11_chr3_118895557_119039846	0/0	t0018	2227	1	1	0	0	0	0	copy fasta	IGSF11	chr3	118895557	119039846
IGSF11_chr3_118895557_119039846	0/0	t0019	2228	1	1	0	0	0	0	copy fasta	IGSF11	chr3	118895557	119039846
IGSF11_chr3_118895557_119039846	0/0	t0020	2227	1	0	1	0	0	0	copy fasta	IGSF11	chr3	118895557	119039846
IGSF11_chr3_118895557_119039846	0/0	t0021	2227	1	1	0	0	0	0	copy fasta	IGSF11	chr3	118895557	119039846
IGSF11_chr3_118895557_119039846	0/0	t0022	2227	1	0	0	1	0	0	copy fasta	IGSF11	chr3	118895557	119039846
IGSF11_chr3_118895557_119039846	0/0	t0023	2228	1	0	0	1	0	0	copy fasta	IGSF11	chr3	118895557	119039846