JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IGSF11_chr3_118895557_119039846	0/0	t0024	2227	1	0	1	0	0	0	copy fasta	IGSF11	chr3	118895557	119039846
IGSF11_chr3_118895557_119039846	0/0	t0025	2228	1	0	0	0	0	1	copy fasta	IGSF11	chr3	118895557	119039846
IGSF11_chr3_118895557_119039846	0/0	t0026	2229	1	0	0	1	0	0	copy fasta	IGSF11	chr3	118895557	119039846
IGSF11_chr3_118895557_119039846	0/0	t0027	2229	1	0	1	0	0	0	copy fasta	IGSF11	chr3	118895557	119039846
IGSF11_chr3_118895557_119039846	0/0	t0028	2229	1	1	0	0	0	0	copy fasta	IGSF11	chr3	118895557	119039846
IGSF11_chr3_118895557_119039846	0/0	t0029	2228	1	0	0	0	0	1	copy fasta	IGSF11	chr3	118895557	119039846
IGSF11_chr3_118895557_119039846	0/0	t0030	2228	1	0	0	1	0	0	copy fasta	IGSF11	chr3	118895557	119039846
IGSF11_chr3_118895557_119039846	0/0	t0031	2229	1	1	0	0	0	0	copy fasta	IGSF11	chr3	118895557	119039846
IGSF1_chrX_131268506_131294306	1/1	t0001	451	322	79	52	142	13	34	copy fasta	IGSF1	chrX	131268506	131294306
IGSF1_chrX_131268506_131294306	0/0	t0002	452	3	0	3	0	0	0	copy fasta	IGSF1	chrX	131268506	131294306
IGSF1_chrX_131268506_131294306	0/0	t0003	450	1	0	0	1	0	0	copy fasta	IGSF1	chrX	131268506	131294306
IGSF1_chrX_131268506_131294306	0/0	t0004	451	1	1	0	0	0	0	copy fasta	IGSF1	chrX	131268506	131294306
IGSF1_chrX_131268506_131294306	0/0	t0005	451	1	0	0	1	0	0	copy fasta	IGSF1	chrX	131268506	131294306
IGSF21_chr1_18102798_18383483	0/1	t0001	489	71	25	16	16	2	11	copy fasta	IGSF21	chr1	18102798	18383483
IGSF21_chr1_18102798_18383483	0/0	t0002	489	48	13	9	14	3	9	copy fasta	IGSF21	chr1	18102798	18383483
IGSF21_chr1_18102798_18383483	0/0	t0003	489	42	24	8	5	1	4	copy fasta	IGSF21	chr1	18102798	18383483
IGSF21_chr1_18102798_18383483	1/0	t0004	489	26	4	11	8	1	1	copy fasta	IGSF21	chr1	18102798	18383483
IGSF21_chr1_18102798_18383483	0/0	t0005	489	9	1	8	0	0	0	copy fasta	IGSF21	chr1	18102798	18383483
IGSF21_chr1_18102798_18383483	0/0	t0006	489	7	0	0	7	0	0	copy fasta	IGSF21	chr1	18102798	18383483
IGSF21_chr1_18102798_18383483	0/0	t0007	489	6	0	0	5	1	0	copy fasta	IGSF21	chr1	18102798	18383483
IGSF21_chr1_18102798_18383483	0/0	t0008	489	6	0	4	0	0	2	copy fasta	IGSF21	chr1	18102798	18383483
IGSF21_chr1_18102798_18383483	0/0	t0009	489	5	5	0	0	0	0	copy fasta	IGSF21	chr1	18102798	18383483
IGSF21_chr1_18102798_18383483	0/0	t0010	489	5	1	0	3	0	1	copy fasta	IGSF21	chr1	18102798	18383483
IGSF21_chr1_18102798_18383483	0/0	t0011	489	4	4	0	0	0	0	copy fasta	IGSF21	chr1	18102798	18383483
IGSF21_chr1_18102798_18383483	0/0	t0012	489	3	3	0	0	0	0	copy fasta	IGSF21	chr1	18102798	18383483
IGSF21_chr1_18102798_18383483	0/0	t0013	489	2	0	2	0	0	0	copy fasta	IGSF21	chr1	18102798	18383483
IGSF21_chr1_18102798_18383483	0/0	t0014	489	2	0	0	0	0	2	copy fasta	IGSF21	chr1	18102798	18383483
IGSF21_chr1_18102798_18383483	0/0	t0015	489	2	1	1	0	0	0	copy fasta	IGSF21	chr1	18102798	18383483
IGSF21_chr1_18102798_18383483	0/0	t0016	489	2	0	0	1	1	0	copy fasta	IGSF21	chr1	18102798	18383483
IGSF21_chr1_18102798_18383483	0/0	t0017	489	1	1	0	0	0	0	copy fasta	IGSF21	chr1	18102798	18383483
IGSF21_chr1_18102798_18383483	0/0	t0018	489	1	1	0	0	0	0	copy fasta	IGSF21	chr1	18102798	18383483
IGSF21_chr1_18102798_18383483	0/0	t0019	489	1	0	0	0	1	0	copy fasta	IGSF21	chr1	18102798	18383483
IGSF21_chr1_18102798_18383483	0/0	t0020	489	1	1	0	0	0	0	copy fasta	IGSF21	chr1	18102798	18383483
IGSF21_chr1_18102798_18383483	0/0	t0021	489	1	1	0	0	0	0	copy fasta	IGSF21	chr1	18102798	18383483
IGSF21_chr1_18102798_18383483	0/0	t0022	489	1	1	0	0	0	0	copy fasta	IGSF21	chr1	18102798	18383483
IGSF21_chr1_18102798_18383483	0/0	t0023	489	1	0	0	1	0	0	copy fasta	IGSF21	chr1	18102798	18383483
IGSF21_chr1_18102798_18383483	0/0	t0024	489	1	0	1	0	0	0	copy fasta	IGSF21	chr1	18102798	18383483
IGSF22_chr11_18699312_18731188	1/1	t0001	305	451	96	78	213	18	44	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	t0002	305	1	0	0	1	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF23_chr19_44608563_44641781	1/1	t0001	478	286	74	51	119	7	33	copy fasta	IGSF23	chr19	44608563	44641781
IGSF23_chr19_44608563_44641781	0/0	t0002	478	64	9	9	43	0	3	copy fasta	IGSF23	chr19	44608563	44641781
IGSF23_chr19_44608563_44641781	0/0	t0003	478	47	1	15	20	5	6	copy fasta	IGSF23	chr19	44608563	44641781
IGSF23_chr19_44608563_44641781	0/0	t0004	478	6	5	1	0	0	0	copy fasta	IGSF23	chr19	44608563	44641781
IGSF23_chr19_44608563_44641781	0/0	t0005	479	5	0	0	5	0	0	copy fasta	IGSF23	chr19	44608563	44641781
IGSF23_chr19_44608563_44641781	0/0	t0006	478	5	0	3	0	2	0	copy fasta	IGSF23	chr19	44608563	44641781
IGSF23_chr19_44608563_44641781	0/0	t0007	478	4	3	1	0	0	0	copy fasta	IGSF23	chr19	44608563	44641781
IGSF23_chr19_44608563_44641781	0/0	t0008	478	2	0	0	2	0	0	copy fasta	IGSF23	chr19	44608563	44641781
IGSF23_chr19_44608563_44641781	0/0	t0009	478	1	0	0	1	0	0	copy fasta	IGSF23	chr19	44608563	44641781
IGSF23_chr19_44608563_44641781	0/0	t0010	478	1	0	0	1	0	0	copy fasta	IGSF23	chr19	44608563	44641781
IGSF23_chr19_44608563_44641781	0/0	t0011	478	1	0	0	1	0	0	copy fasta	IGSF23	chr19	44608563	44641781