JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IGSF3_chr1_116569408_116672733	1/1	t0001	3651	185	41	46	54	12	30	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	t0002	3633	22	0	1	21	0	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	t0003	3651	19	16	1	1	0	1	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	t0004	3651	8	8	0	0	0	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	t0005	3651	5	5	0	0	0	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	t0006	3651	3	3	0	0	0	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	t0007	3651	2	0	0	2	0	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	t0008	3651	2	1	0	0	0	1	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	t0009	3651	2	0	0	0	2	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	t0010	3651	2	0	2	0	0	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	t0011	3651	2	2	0	0	0	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	t0012	3651	1	1	0	0	0	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	t0013	3651	1	1	0	0	0	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	t0014	3651	1	1	0	0	0	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	t0015	3651	1	1	0	0	0	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	t0016	3651	1	0	0	1	0	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	t0017	3651	1	1	0	0	0	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	t0018	3651	1	0	0	1	0	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	t0019	3651	1	1	0	0	0	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	t0020	3651	1	1	0	0	0	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	t0021	3651	1	1	0	0	0	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	t0022	3633	1	0	0	0	0	1	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	t0023	3633	1	0	0	0	0	1	copy fasta	IGSF3	chr1	116569408	116672733
IGSF5_chr21_39740183_39807081	0/0	t0001	1052	88	2	15	56	4	11	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	1/0	t0002	1052	88	17	9	50	3	8	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/1	t0003	1052	67	19	21	9	5	12	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	t0004	1052	43	6	9	23	0	5	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	t0005	1052	16	12	4	0	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	t0006	1052	10	10	0	0	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	t0007	1052	7	2	1	4	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	t0008	1052	6	0	0	6	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	t0009	1052	4	4	0	0	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	t0010	1052	3	3	0	0	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	t0011	1052	3	2	1	0	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	t0012	1052	2	2	0	0	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	t0013	1052	2	1	1	0	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	t0014	1052	2	2	0	0	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	t0015	1052	1	1	0	0	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	t0016	1052	1	1	0	0	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	t0017	1052	1	1	0	0	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	t0018	1052	1	1	0	0	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	t0019	1052	1	1	0	0	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	t0020	1052	1	0	0	1	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	t0021	1052	1	1	0	0	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	t0022	1052	1	0	1	0	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	t0023	1052	1	1	0	0	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	t0024	1052	1	1	0	0	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	t0025	1052	1	0	0	1	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF6_chr16_21634550_21657608	0/1	t0001	1995	120	25	24	45	8	17	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	0/0	t0002	2003	56	4	7	44	0	1	copy fasta	IGSF6	chr16	21634550	21657608