Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ABHD18_chr4_127960406_128044953	0/0	t0014	4681	5	0	0	5	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0015	4349	5	5	0	0	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0016	4351	5	3	2	0	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0017	4361	5	2	1	1	0	1	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0018	4348	5	4	1	0	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0019	4356	5	2	1	0	2	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0020	4680	4	0	0	4	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0021	4682	4	0	1	3	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0022	4353	4	4	0	0	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0023	4364	4	0	1	3	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0024	4354	4	0	2	1	0	1	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0025	4348	3	3	0	0	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0026	4360	3	1	0	2	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0027	4331	3	2	1	0	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0028	4344	3	0	0	2	1	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0029	4683	2	0	0	2	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0030	4680	2	0	0	2	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0031	4681	2	0	1	1	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0032	4677	2	0	0	2	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0033	4669	2	0	0	2	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0034	4350	2	2	0	0	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0035	4351	2	2	0	0	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0036	4355	2	2	0	0	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0037	4346	2	0	0	2	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0038	4354	2	0	1	0	0	1	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0039	4358	2	0	0	1	0	1	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0040	4360	2	2	0	0	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0041	4362	2	0	0	1	0	1	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0042	4349	2	0	2	0	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0043	4331	2	2	0	0	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0044	4349	2	1	1	0	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0045	4363	2	1	0	1	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0046	4346	2	2	0	0	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0047	4352	2	1	1	0	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0048	4353	1	1	0	0	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0049	4682	1	0	0	1	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0050	4673	1	0	0	1	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0051	4681	1	0	0	1	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0052	4670	1	0	0	1	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0053	4681	1	0	0	1	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0054	4678	1	0	0	1	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0055	4681	1	0	0	1	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0056	4669	1	0	0	1	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0057	4681	1	0	0	1	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0058	4354	1	1	0	0	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0059	4351	1	1	0	0	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0060	4352	1	1	0	0	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0061	4362	1	1	0	0	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0062	4354	1	1	0	0	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0063	4351	1	1	0	0	0	0	copy fasta	ABHD18	chr4	127960406	128044953