Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANKRD27_chr19_32592006_32680180	0/0	t0015	1280	1	0	0	0	1	0	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	t0016	1278	1	1	0	0	0	0	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	t0017	1280	1	0	0	0	0	1	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	t0018	1278	1	0	0	1	0	0	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD28_chr3_15662236_15802979	0/1	t0001	4494	99	11	23	44	7	13	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0002	4491	87	15	8	58	0	6	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	1/0	t0003	4493	21	3	6	7	1	3	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0004	4494	15	9	2	0	0	4	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0005	4493	12	10	2	0	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0006	4493	11	8	3	0	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0007	4494	8	0	0	8	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0008	4493	8	5	0	3	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0009	4491	6	6	0	0	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0010	4493	5	4	1	0	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0011	4495	4	0	3	1	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0012	4493	4	4	0	0	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0013	4490	3	0	0	3	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0014	4494	3	0	3	0	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0015	4493	3	0	0	0	0	3	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0016	4493	3	0	2	0	1	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0017	4492	2	0	0	2	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0018	4493	2	2	0	0	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0019	4492	2	2	0	0	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0020	4492	2	2	0	0	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0021	4493	2	0	0	2	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0022	4494	1	0	1	0	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0023	4491	1	0	0	1	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0024	4491	1	0	0	1	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0025	4491	1	1	0	0	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0026	4491	1	0	0	1	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0027	4491	1	1	0	0	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0028	4491	1	0	1	0	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0029	4491	1	0	0	1	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0030	4493	1	1	0	0	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0031	4491	1	0	0	1	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0032	4491	1	0	0	1	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0033	4492	1	0	0	1	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0034	4492	1	0	0	1	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0035	4491	1	1	0	0	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0036	4493	1	1	0	0	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0037	4494	1	1	0	0	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0038	4494	1	0	0	1	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0039	4493	1	1	0	0	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0040	4494	1	0	1	0	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0041	4494	1	0	0	1	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0042	4495	1	0	0	0	0	1	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0043	4494	1	0	0	1	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0044	4494	1	0	0	0	0	1	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0045	4494	1	0	0	0	0	1	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0046	4494	1	0	0	0	0	1	copy fasta	ANKRD28	chr3	15662236	15802979