JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IGSF6_chr16_21634550_21657608	0/0	t0003	1995	51	0	3	41	0	7	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	0/0	t0004	1995	33	29	4	0	0	0	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	0/0	t0005	1996	33	1	4	24	1	3	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	0/0	t0006	1997	17	1	8	2	3	3	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	1/0	t0007	1995	16	0	10	0	1	4	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	0/0	t0008	1996	14	5	4	1	0	4	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	0/0	t0009	2015	12	0	0	11	0	1	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	0/0	t0010	1995	8	6	0	2	0	0	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	0/0	t0011	1995	5	0	4	0	0	1	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	0/0	t0012	2004	5	0	0	5	0	0	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	0/0	t0013	1996	5	0	0	5	0	0	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	0/0	t0014	2011	4	0	0	3	0	1	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	0/0	t0015	2019	4	0	0	4	0	0	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	0/0	t0016	1999	3	1	0	2	0	0	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	0/0	t0017	1994	2	1	0	0	1	0	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	0/0	t0018	2007	2	0	2	0	0	0	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	0/0	t0019	1996	2	2	0	0	0	0	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	0/0	t0020	1996	2	1	0	0	0	1	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	0/0	t0021	1996	2	0	2	0	0	0	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	0/0	t0022	1996	2	0	1	1	0	0	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	0/0	t0023	2014	1	0	0	1	0	0	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	0/0	t0024	1996	1	0	0	0	0	1	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	0/0	t0025	2003	1	0	0	1	0	0	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	0/0	t0026	1995	1	0	1	0	0	0	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	0/0	t0027	2003	1	0	0	1	0	0	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	0/0	t0028	1996	1	0	1	0	0	0	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	0/0	t0029	1996	1	0	0	1	0	0	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	0/0	t0030	1995	1	1	0	0	0	0	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	0/0	t0031	1995	1	1	0	0	0	0	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	0/0	t0032	1996	1	0	0	1	0	0	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	0/0	t0033	2004	1	0	0	1	0	0	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	0/0	t0034	2005	1	0	0	1	0	0	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	0/0	t0035	1996	1	0	1	0	0	0	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	0/0	t0036	1994	1	0	0	1	0	0	copy fasta	IGSF6	chr16	21634550	21657608
IGSF8_chr1_160086343_160103619	1/1	t0001	429	366	76	67	173	11	37	copy fasta	IGSF8	chr1	160086343	160103619
IGSF8_chr1_160086343_160103619	0/0	t0002	429	25	1	11	7	3	3	copy fasta	IGSF8	chr1	160086343	160103619
IGSF8_chr1_160086343_160103619	0/0	t0003	427	13	13	0	0	0	0	copy fasta	IGSF8	chr1	160086343	160103619
IGSF8_chr1_160086343_160103619	0/0	t0004	429	6	0	0	6	0	0	copy fasta	IGSF8	chr1	160086343	160103619
IGSF8_chr1_160086343_160103619	0/0	t0005	429	2	2	0	0	0	0	copy fasta	IGSF8	chr1	160086343	160103619
IGSF8_chr1_160086343_160103619	0/0	t0006	429	1	1	0	0	0	0	copy fasta	IGSF8	chr1	160086343	160103619
IGSF8_chr1_160086343_160103619	0/0	t0007	429	1	1	0	0	0	0	copy fasta	IGSF8	chr1	160086343	160103619
IGSF8_chr1_160086343_160103619	0/0	t0008	429	1	0	0	1	0	0	copy fasta	IGSF8	chr1	160086343	160103619
IGSF8_chr1_160086343_160103619	0/0	t0009	429	1	0	0	1	0	0	copy fasta	IGSF8	chr1	160086343	160103619
IGSF9B_chr11_133891438_133961968	0/0	t0001	12876	42	3	7	22	2	8	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0002	12846	28	13	3	8	0	4	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0003	12865	15	0	0	10	0	5	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0004	12846	14	0	4	10	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0005	12873	12	1	3	6	1	1	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0006	12869	10	0	7	3	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0007	12865	10	0	5	5	0	0	copy fasta	IGSF9B	chr11	133891438	133961968