JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IGSF9B_chr11_133891438_133961968	0/0	t0058	12843	1	1	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0059	12843	1	1	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0060	12742	1	1	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0061	12740	1	1	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0062	12873	1	0	0	1	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0063	12865	1	0	0	0	0	1	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0064	12876	1	0	1	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0065	12871	1	0	0	1	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0066	12876	1	1	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0067	12770	1	1	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0068	12873	1	0	0	1	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0069	12875	1	1	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0070	12765	1	0	1	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0071	12770	1	1	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0072	12900	1	0	0	1	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0073	12873	1	0	0	1	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0074	12873	1	0	0	1	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0075	12848	1	0	0	0	1	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0076	12873	1	0	0	1	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0077	12874	1	0	0	1	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0078	12876	1	0	1	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0079	12874	1	1	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0080	12875	1	0	0	1	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0081	12765	1	1	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0082	12865	1	0	0	0	0	1	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0083	12865	1	0	1	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0084	12865	1	0	0	1	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0085	12865	1	0	1	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0086	12863	1	1	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0087	12865	1	0	1	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0088	12867	1	0	0	0	0	1	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0089	12867	1	0	0	0	0	1	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0090	12871	1	1	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0091	12871	1	0	0	1	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0092	12871	1	0	0	1	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0093	12870	1	0	0	1	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0094	12876	1	0	1	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0095	12876	1	0	0	1	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0096	12876	1	0	0	1	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0097	12876	1	0	0	1	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0098	12876	1	0	0	1	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0099	12871	1	0	0	1	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0100	12876	1	0	0	1	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0101	12876	1	0	0	0	0	1	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0102	12876	1	0	0	1	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0103	12876	1	0	0	0	0	1	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0104	12876	1	0	0	1	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0105	12876	1	0	0	1	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0106	12739	1	1	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0107	12840	1	0	0	0	0	1	copy fasta	IGSF9B	chr11	133891438	133961968